BioNJ (doc)
Process Info:
Number of taxa: 42
Average sequences length: 550
(between 550 and 550)
Assumed to be: protein
Computation:
Phylogeny: 2 seconds
Overall time: 2 seconds
Number of taxa: 42
Average sequences length: 550
(between 550 and 550)
Assumed to be: protein
Computation:
Phylogeny: 2 seconds
Overall time: 2 seconds
The analysis was performed on the Phylogeny.fr platform and comprised the following steps. |
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Phylogeny
BioNJ 
Outputs: Settings: Model: JTT |
The phylogenetic tree was reconstructed using the neighbor joining method implemented in the BioNJ program. Distances were calculated using ProtDist. The JTT subsitution model was selected for the analysis. |
Please cite:
- Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
- Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
- Gascuel O. BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Mol Biol. Evol. 1997, Jul;14(7):685-95. (PubMed)
- Felsenstein J. PHYLIP - Phylogeny Inference Package (Version 3.2). 1989, Cladistics 5: 164-166
