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Tree Rendering
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Tree Rendering results

result tree
Figure 1: Phylogenetic tree.
  ==> Download the tree:   PNG    -   PDF    -   SVG    -   TGF (Treedyn format)    -   Newick    -   Text

Select an action:

Reset Reset (cancel all changes)
Reroot (mid-point) Mid-point rooting
Colorize using gi Use Genbank information to automatically rename leaves by: species and gi species only      colorize
Collapse Collapse branches having branch support value smaller than % or a number of bootstraps smaller than

Select an action and click leaf or internal branch:

Set leaf/subtree color Colorize leaf  branch     choose a color color box   and a legend label
Reroot (outgroup) Reroot (outgroup)
Flip subtree Flip (flip an entire tree at a node)
Swap subtrees Swap (flip two branches at a node)
Rename leaf Change leaf name
Add annotation Add leaf annotations color color box


Branch support values Branch lengths  None    color: color box
Display branch support values in %
Display legend



Tree style:

    Cladogram (ignore branch lengths)
    Radial (by Drawtree)
    Radial (by TreeDyn)

Image size:

80%     100%     150%     200%

Please cite:
  1. Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
  2. Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
  3. Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
  4. Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, Apr;17(4):540-52. (PubMed)
  5. Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 2003, Oct;52(5):696-704. (PubMed)
  6. Anisimova M., Gascuel O. Approximate likelihood ratio test for branchs: A fast, accurate and powerful alternative. Syst Biol. 2006, Aug;55(4):539-52. (PubMed)
  7. Chevenet F., Brun C., Banuls AL., Jacq B., Chisten R. TreeDyn: towards dynamic graphics and annotations for analyses of trees. BMC Bioinformatics. 2006, Oct 10;7:439. (PubMed)

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