Phylogeny.fr
Robust Phylogenetic Analysis For The Non-Specialist
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Robust Phylogenetic Analysis For The Non-Specialist
Phylogeny.fr is a free, simple to use web service dedicated to
reconstructing and analysing phylogenetic relationships between molecular
sequences.
Phylogeny.fr runs and connects various bioinformatics programs to reconstruct a robust phylogenetic tree from a set of sequences.
If you use this site, please cite:
Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
Phylogeny.fr runs and connects various bioinformatics programs to reconstruct a robust phylogenetic tree from a set of sequences.
If you use this site, please cite:
Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
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Phylogeny analysis
- "One Click"
- Paste your set of sequences and let the software make decisions on your behalf (Each step is optimized for your data).
- "Advanced"
- Manually set parameters for the various steps.
- "A la Carte"
- Create your own phylogeny workflow using more programs available.
Explore your sequence neighbors
Paste your single sequence, run Blast and explore its homologous sequences.
Online phylogeny programs
Direct access to the individual tools available on this server.
| Multiple Alignment: | Phylogeny: | Tree viewers: | Utilities: |
|---|---|---|---|
| MUSCLE | PhyML | TreeDyn | Gblocks |
| T-Coffee / 3D-Coffee | TNT | Drawgram | Jalview |
| ClustalW | BioNJ | Drawtree | Readseq |
| ProbCons | MrBayes | ATV | Format converter |
This project is funded by the Réseau National des Génopoles (RNG).
This project is managed in a GForge project, which aims to help collaboration and development management (using Subversion).
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This project is managed in a GForge project, which aims to help collaboration and development management (using Subversion).
RSS Feed
Mailing-list
Mentions légales
