Regarding the constantly growing number of users and the limited space on our server, results will not be conserved for more than one week.
We apologize for the inconvenience.

BioNJ (doc)




Datatype: auto-select       protein       DNA

Upload your alignment (FASTA, Phylip, Clustal, EMBL or NEXUS format) or your distance matrixin case of a distance matrix, no parameter is used (Phylip or NEXUS format) from a file:

Or paste it here (load an example of alignment or an example of distance matrix)

Maximum number of taxa for a distance matrix: 5000;
Limits for nucleic acids: max. sequences = 5000, max. length = 5000;
Limits for proteins: max. sequences = 5000, max. length = 5000.


Settings


Number of bootstrapsIn the case of a protein analysis, realised by combining Seqboot (Phylip package) to perform bootstrap and Consense (Phylip package) to obtain the bootstrap tree from the BioNJ output (limit=1000). In the case of a nucleic acid analysis, realised by FastDist, and consensus generated by Consense (Phylip package) (limit=1000).:

Substitution model:   

Gamma distribution parameter (for amino-acid substitution models):    
Transition / transversion ratio (for nucleic acids):    



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