Regarding the constantly growing number of users and the limited space on our server, results will not be conserved for more than one week.
We apologize for the inconvenience.
beside sequences count and average length limit for the alignment stage there is also a limitation on the phylogeny stage (sequences_count*sequences_count*aligned_sequence_length=80000000) that will be checked once the alignment is done.
usual bootstrapping procedure is replaced by a new confidence index that is much faster to compute.
See Anisimova M., Gascuel O. Approximate likelihood ratio test for branchs: A fast, accurate and powerful alternative.
Syst Biol. 2006, Aug;55(4):539-52. (PubMed
) for details.