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Alignment
MUSCLE 
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Alignment results
Figure 1: Sequence alignment.
Legend:
Similar residues are colored as the most conserved one (according to BLOSUM62).
Average BLOSUM62 score: Max: 3.0 Mid: 1.5 Low: 0.5
Legend:
Similar residues are colored as the most conserved one (according to BLOSUM62).
Average BLOSUM62 score: Max: 3.0 Mid: 1.5 Low: 0.5
Input:
Outputs:
Alignment in Fasta format Alignment in Phylip format Alignment in Clustal formatTaxon names association table
| Output Taxon Name | Original (Long) Taxon Name | |
|---|---|---|
| Bovidae_Co | Bovidae_Cow | (Clustal, HTML, PHYLIP) |
| Bovidae_Cow | Bovidae_Cow | (Guide tree, FASTA) |
| Caprinae_G | Caprinae_Goat | (Clustal, HTML, PHYLIP) |
| Caprinae_Goat | Caprinae_Goat | (Guide tree, FASTA) |
| Caprinae_S | Caprinae_Sheep | (Clustal, HTML, PHYLIP) |
| Caprinae_Sheep | Caprinae_Sheep | (Guide tree, FASTA) |
| Cervidae_D | Cervidae_Deer | (PHYLIP, HTML, Clustal) |
| Cervidae_Deer | Cervidae_Deer | (FASTA, Guide tree) |
| Equidae_Ho | Equidae_Horse | (PHYLIP, Clustal, HTML) |
| Equidae_Horse | Equidae_Horse | (FASTA, Guide tree) |
| Suina_Pig | Suina_Pig | (FASTA, PHYLIP, HTML, Clustal, Guide tree) |
Download taxon names association tableMultiple sequence alignment editor:
(If you expect to edit the alignment by yourself, you can consult Jalview multiple alignment editor documentation
.)Please cite:
- Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
- Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
- Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
