| this is just a test |
Alignment
MUSCLE 
Curation
Gblocks
Phylogeny
TNT
Tree Rendering
TreeDyn |
Help  |
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Process Info:
Number of taxa: n/a
Computation:
Overall time: 0 seconds
Number of taxa: n/a
Computation:
Overall time: 0 seconds
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Alignment
MUSCLE 
Settings: Run mode: full processing mode |
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Curation
Gblocks
Settings: Min. seq. for flank pos.: 85% Max. contig. nonconserved pos.: 8 Min. block length: 10 Gaps in final blocks: no |
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Phylogeny
TNT
Settings: Search: New Technology (Sect. Search, Tree Fusing) Stepmatrix: Disabled Transversion cost: 1 |
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Tree Rendering
TreeDyn
Settings: Conformation: rectangular Legend: displayed Branch annotation: bootstrap Font: Times 8 normal |
Please cite:
- Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
- Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
- Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
- Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, Apr;17(4):540-52. (PubMed)
- Goloboff P., Farris S., Nixon K. TNT (Tree analysis using New Technology) ver. 1.1 2000, Published by the authors, Tucumán, Argentina.
- Chevenet F., Brun C., Banuls AL., Jacq B., Chisten R. TreeDyn: towards dynamic graphics and annotations for analyses of trees. BMC Bioinformatics. 2006, Oct 10;7:439. (PubMed)
