Equipe MAB - LIRMM Information Genomique et Structurale
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"A la Carte" Mode
Alignment
MUSCLE
->
Curation
Gblocks
->
Phylogeny
PhyML
->
Tree Rendering
TreeDyn
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Curation results


Figure 1: Selected alignment blocks (underlined in  blue ).
Input:
Input raw alignment

Outputs:
> Cured alignment in FASTA Format
> Cured alignment in PHYLIP Format
Conserved positions: 43%

Taxon names association table
Table I: Taxon names association table
Output Taxon NameOriginal (Long) Taxon Name 
   
AY495991.1AY495991.1_Penicillium_dipodomyus(PHYLIP) 
AY495991.1_PeniAY495991.1_Penicillium_dipodomyus(HTML) 
AY495991.1_Penicillium_dipodomyusAY495991.1_Penicillium_dipodomyus(Guide tree, FASTA) 
AY674293.1AY674293.1_Penicillium_viridicatum(PHYLIP) 
AY674293.1_PeniAY674293.1_Penicillium_viridicatum(HTML) 
AY674293.1_Penicillium_viridicatumAY674293.1_Penicillium_viridicatum(Guide tree, FASTA) 
AY674295.1AY674295.1_Penicillium_viridicatum(PHYLIP) 
AY674295.1_PeniAY674295.1_Penicillium_viridicatum(HTML) 
AY674295.1_Penicillium_viridicatumAY674295.1_Penicillium_viridicatum(FASTA, Guide tree) 
AY674301.1AY674301.1_Penicillium_aurantiogriseum_var._neoechinulatum(PHYLIP) 
AY674301.1_PeniAY674301.1_Penicillium_aurantiogriseum_var._neoechinulatum(HTML) 
AY674301.1_Penicillium_aurantiogriseum_var._neoechinulatumAY674301.1_Penicillium_aurantiogriseum_var._neoechinulatum(FASTA, Guide tree) 
AY674348.1AY674348.1_Penicillium_discolor(PHYLIP) 
AY674348.1_PeniAY674348.1_Penicillium_discolor(HTML) 
AY674348.1_Penicillium_discolorAY674348.1_Penicillium_discolor(FASTA, Guide tree) 
BR028_D_PeBR028_D_Penicillium_sp_reverse(PHYLIP) 
BR028_D_PenicilBR028_D_Penicillium_sp_reverse(HTML) 
BR028_D_Penicillium_sp_reverseBR028_D_Penicillium_sp_reverse(FASTA, Guide tree) 
BR177_A_P.BR177_A_P._nalgiovense_BR177_A(PHYLIP) 
BR177_A_P._nalgBR177_A_P._nalgiovense_BR177_A(HTML) 
BR177_A_P._nalgiovense_BR177_ABR177_A_P._nalgiovense_BR177_A(Guide tree, FASTA) 
BR212_A_PeBR212_A_Penicillium_sp_BR212_A(PHYLIP) 
BR212_A_PenicilBR212_A_Penicillium_sp_BR212_A(HTML) 
BR212_A_Penicillium_sp_BR212_ABR212_A_Penicillium_sp_BR212_A(FASTA, Guide tree) 
BR310_A_PeBR310_A_Penicillium_sp_BR310_A(PHYLIP) 
BR310_A_PenicilBR310_A_Penicillium_sp_BR310_A(HTML) 
BR310_A_Penicillium_sp_BR310_ABR310_A_Penicillium_sp_BR310_A(Guide tree, FASTA) 
BR362_B2_PBR362_B2_Penicillium_sp_BR362_B2(PHYLIP) 
BR362_B2_PeniciBR362_B2_Penicillium_sp_BR362_B2(HTML) 
BR362_B2_Penicillium_sp_BR362_B2BR362_B2_Penicillium_sp_BR362_B2(FASTA, Guide tree) 
EF651913.1EF651913.1_Aspergillus_chevalieri(PHYLIP) 
EF651913.1_AspeEF651913.1_Aspergillus_chevalieri(HTML) 
EF651913.1_Aspergillus_chevalieriEF651913.1_Aspergillus_chevalieri(Guide tree, FASTA) 
FJ930939.1FJ930939.1_Penicillium_palitans(PHYLIP) 
FJ930939.1_PeniFJ930939.1_Penicillium_palitans(HTML) 
FJ930939.1_Penicillium_palitansFJ930939.1_Penicillium_palitans(Guide tree, FASTA) 
FJ930953.1FJ930953.1_Penicillium_biforme(PHYLIP) 
FJ930953.1_PeniFJ930953.1_Penicillium_biforme(HTML) 
FJ930953.1_Penicillium_biformeFJ930953.1_Penicillium_biforme(Guide tree, FASTA) 
FJ930956.1FJ930956.1_Penicillium_camemberti(PHYLIP) 
FJ930956.1_PeniFJ930956.1_Penicillium_camemberti(HTML) 
FJ930956.1_Penicillium_camembertiFJ930956.1_Penicillium_camemberti(FASTA, Guide tree) 
FJ930967.1FJ930967.1_Penicillium_camemberti(PHYLIP) 
FJ930967.1_PeniFJ930967.1_Penicillium_camemberti(HTML) 
FJ930967.1_Penicillium_camembertiFJ930967.1_Penicillium_camemberti(FASTA, Guide tree) 
FJ930969.1FJ930969.1_Penicillium_camemberti(PHYLIP) 
FJ930969.1_PeniFJ930969.1_Penicillium_camemberti(HTML) 
FJ930969.1_Penicillium_camembertiFJ930969.1_Penicillium_camemberti(FASTA, Guide tree) 
FJ930971.1FJ930971.1_Penicillium_caseifulvum(PHYLIP) 
FJ930971.1_PeniFJ930971.1_Penicillium_caseifulvum(HTML) 
FJ930971.1_Penicillium_caseifulvumFJ930971.1_Penicillium_caseifulvum(FASTA, Guide tree) 
FJ930972.1FJ930972.1_Penicillium_caseifulvum(PHYLIP) 
FJ930972.1_PeniFJ930972.1_Penicillium_caseifulvum(HTML) 
FJ930972.1_Penicillium_caseifulvumFJ930972.1_Penicillium_caseifulvum(FASTA, Guide tree) 
FJ930973.1FJ930973.1_Penicillium_caseifulvum(PHYLIP) 
FJ930973.1_PeniFJ930973.1_Penicillium_caseifulvum(HTML) 
FJ930973.1_Penicillium_caseifulvumFJ930973.1_Penicillium_caseifulvum(Guide tree, FASTA) 
JX996822.1JX996822.1_Penicillium_goetzii(PHYLIP) 
JX996822.1_PeniJX996822.1_Penicillium_goetzii(HTML) 
JX996822.1_Penicillium_goetziiJX996822.1_Penicillium_goetzii(FASTA, Guide tree) 
JX996823.1JX996823.1_Penicillium_goetzii(PHYLIP) 
JX996823.1_PeniJX996823.1_Penicillium_goetzii(HTML) 
JX996823.1_Penicillium_goetziiJX996823.1_Penicillium_goetzii(Guide tree, FASTA) 
JX996824.1JX996824.1_Penicillium_goetzii(PHYLIP) 
JX996824.1_PeniJX996824.1_Penicillium_goetzii(HTML) 
JX996824.1_Penicillium_goetziiJX996824.1_Penicillium_goetzii(Guide tree, FASTA) 
JX996825.1JX996825.1_Penicillium_nalgiovense(PHYLIP) 
JX996825.1_PeniJX996825.1_Penicillium_nalgiovense(HTML) 
JX996825.1_Penicillium_nalgiovenseJX996825.1_Penicillium_nalgiovense(Guide tree, FASTA) 
JX996832.1JX996832.1_Penicillium_dipodomyis(PHYLIP) 
JX996832.1_PeniJX996832.1_Penicillium_dipodomyis(HTML) 
JX996832.1_Penicillium_dipodomyisJX996832.1_Penicillium_dipodomyis(FASTA, Guide tree) 
JX996837.1JX996837.1_Penicillium_nalgiovense(PHYLIP) 
JX996837.1_PeniJX996837.1_Penicillium_nalgiovense(HTML) 
JX996837.1_Penicillium_nalgiovenseJX996837.1_Penicillium_nalgiovense(Guide tree, FASTA) 
JX996838.1JX996838.1_Penicillium_dipodomyis(PHYLIP) 
JX996838.1_PeniJX996838.1_Penicillium_dipodomyis(HTML) 
JX996838.1_Penicillium_dipodomyisJX996838.1_Penicillium_dipodomyis(FASTA, Guide tree) 
JX996855.1JX996855.1_Penicillium_goetzii(PHYLIP) 
JX996855.1_PeniJX996855.1_Penicillium_goetzii(HTML) 
JX996855.1_Penicillium_goetziiJX996855.1_Penicillium_goetzii(Guide tree, FASTA) 
JX996857.1JX996857.1_Penicillium_goetzii(PHYLIP) 
JX996857.1_PeniJX996857.1_Penicillium_goetzii(HTML) 
JX996857.1_Penicillium_goetziiJX996857.1_Penicillium_goetzii(Guide tree, FASTA) 
KU896811.1KU896811.1_Penicillium_nalgiovense(PHYLIP) 
KU896811.1_PeniKU896811.1_Penicillium_nalgiovense(HTML) 
KU896811.1_Penicillium_nalgiovenseKU896811.1_Penicillium_nalgiovense(FASTA, Guide tree) 
KU896813.1KU896813.1_Penicillium_freii(PHYLIP) 
KU896813.1_PeniKU896813.1_Penicillium_freii(HTML) 
KU896813.1_Penicillium_freiiKU896813.1_Penicillium_freii(FASTA, Guide tree) 
KU896815.1KU896815.1_Penicillium_goetzii(PHYLIP) 
KU896815.1_PeniKU896815.1_Penicillium_goetzii(HTML) 
KU896815.1_Penicillium_goetziiKU896815.1_Penicillium_goetzii(Guide tree, FASTA) 
MG490884.1MG490884.1_Penicillium_speluncae(PHYLIP) 
MG490884.1_PeniMG490884.1_Penicillium_speluncae(HTML) 
MG490884.1_Penicillium_speluncaeMG490884.1_Penicillium_speluncae(FASTA, Guide tree) 
MK451238.1MK451238.1_Penicillium_biforme(PHYLIP) 
MK451238.1_PeniMK451238.1_Penicillium_biforme(HTML) 
MK451238.1_Penicillium_biformeMK451238.1_Penicillium_biforme(Guide tree, FASTA) 
MN149912.1MN149912.1_Penicillium_speluncae(PHYLIP) 
MN149912.1_PeniMN149912.1_Penicillium_speluncae(HTML) 
MN149912.1_Penicillium_speluncaeMN149912.1_Penicillium_speluncae(FASTA, Guide tree) 
MN149917.1MN149917.1_Penicillium_discolor(PHYLIP) 
MN149917.1_PeniMN149917.1_Penicillium_discolor(HTML) 
MN149917.1_Penicillium_discolorMN149917.1_Penicillium_discolor(Guide tree, FASTA) 
MN149918.1MN149918.1_Penicillium_palitans(PHYLIP) 
MN149918.1_PeniMN149918.1_Penicillium_palitans(HTML) 
MN149918.1_Penicillium_palitansMN149918.1_Penicillium_palitans(FASTA, Guide tree) 
MN149919.1MN149919.1_Penicillium_solitum(PHYLIP) 
MN149919.1_PeniMN149919.1_Penicillium_solitum(HTML) 
MN149919.1_Penicillium_solitumMN149919.1_Penicillium_solitum(Guide tree, FASTA) 
MN149922.1MN149922.1_Penicillium_discolor(PHYLIP) 
MN149922.1_PeniMN149922.1_Penicillium_discolor(HTML) 
MN149922.1_Penicillium_discolorMN149922.1_Penicillium_discolor(FASTA, Guide tree) 
MN149928.1MN149928.1_Penicillium_solitum(PHYLIP) 
MN149928.1_PeniMN149928.1_Penicillium_solitum(HTML) 
MN149928.1_Penicillium_solitumMN149928.1_Penicillium_solitum(FASTA, Guide tree) 
MN969373.1MN969373.1_Penicillium_biforme(PHYLIP) 
MN969373.1_PeniMN969373.1_Penicillium_biforme(HTML) 
MN969373.1_Penicillium_biformeMN969373.1_Penicillium_biforme(Guide tree, FASTA) 
MN969380.1MN969380.1_Penicillium_cyclopium(PHYLIP) 
MN969380.1_PeniMN969380.1_Penicillium_cyclopium(HTML) 
MN969380.1_Penicillium_cyclopiumMN969380.1_Penicillium_cyclopium(Guide tree, FASTA) 
MN969387.1MN969387.1_Penicillium_melanoconidium(PHYLIP) 
MN969387.1_PeniMN969387.1_Penicillium_melanoconidium(HTML) 
MN969387.1_Penicillium_melanoconidiumMN969387.1_Penicillium_melanoconidium(FASTA, Guide tree) 
MN969388.1MN969388.1_Penicillium_neoechinulatum(PHYLIP) 
MN969388.1_PeniMN969388.1_Penicillium_neoechinulatum(HTML) 
MN969388.1_Penicillium_neoechinulatumMN969388.1_Penicillium_neoechinulatum(Guide tree, FASTA) 
MN969392.1MN969392.1_Penicillium_polonicum(PHYLIP) 
MN969392.1_PeniMN969392.1_Penicillium_polonicum(HTML) 
MN969392.1_Penicillium_polonicumMN969392.1_Penicillium_polonicum(Guide tree, FASTA) 
MN969406.1MN969406.1_Penicillium_viridicatum(PHYLIP) 
MN969406.1_PeniMN969406.1_Penicillium_viridicatum(HTML) 
MN969406.1_Penicillium_viridicatumMN969406.1_Penicillium_viridicatum(FASTA, Guide tree) 
MN969437.1MN969437.1_Ascospirella_lutea(PHYLIP) 
MN969437.1_AscoMN969437.1_Ascospirella_lutea(HTML) 
MN969437.1_Ascospirella_luteaMN969437.1_Ascospirella_lutea(Guide tree, FASTA) 
MT013_PeniMT013_Penicillium_polonicum_MT013(PHYLIP) 
MT013_PenicilliMT013_Penicillium_polonicum_MT013(HTML) 
MT013_Penicillium_polonicum_MT013MT013_Penicillium_polonicum_MT013(FASTA, Guide tree) 
MT018_PeniMT018_Penicillium_nalgiovense_reverse(PHYLIP) 
MT018_PenicilliMT018_Penicillium_nalgiovense_reverse(HTML) 
MT018_Penicillium_nalgiovense_reverseMT018_Penicillium_nalgiovense_reverse(Guide tree, FASTA) 
MT039.1_PeMT039.1_Penicillium_sp_reverse(PHYLIP) 
MT039.1_PenicilMT039.1_Penicillium_sp_reverse(HTML) 
MT039.1_Penicillium_sp_reverseMT039.1_Penicillium_sp_reverse(FASTA, Guide tree) 
MT071_PeniMT071_Penicillium_nalgiovense _MT071_reverse(PHYLIP) 
MT071_PenicilliMT071_Penicillium_nalgiovense _MT071_reverse(HTML) 
MT071_Penicillium_nalgiovense_MT071_reverseMT071_Penicillium_nalgiovense _MT071_reverse(Guide tree, FASTA) 
MT216_PeniMT216_Penicillium_polonicum_MT216(PHYLIP) 
MT216_PenicilliMT216_Penicillium_polonicum_MT216(HTML) 
MT216_Penicillium_polonicum_MT216MT216_Penicillium_polonicum_MT216(FASTA, Guide tree) 
OR206420.1OR206420.1_Penicillium_fuscoglaucum(PHYLIP) 
OR206420.1_PeniOR206420.1_Penicillium_fuscoglaucum(HTML) 
OR206420.1_Penicillium_fuscoglaucumOR206420.1_Penicillium_fuscoglaucum(Guide tree, FASTA) 
OR241753.1OR241753.1_Penicillium_palitans(PHYLIP) 
OR241753.1_PeniOR241753.1_Penicillium_palitans(HTML) 
OR241753.1_Penicillium_palitansOR241753.1_Penicillium_palitans(FASTA, Guide tree) 
OR644443.1OR644443.1_Penicillium_polonicum(PHYLIP) 
OR644443.1_PeniOR644443.1_Penicillium_polonicum(HTML) 
OR644443.1_Penicillium_polonicumOR644443.1_Penicillium_polonicum(Guide tree, FASTA) 
PV058374.1PV058374.1_Penicillium_neoechinulatum(PHYLIP) 
PV058374.1_PeniPV058374.1_Penicillium_neoechinulatum(HTML) 
PV058374.1_Penicillium_neoechinulatumPV058374.1_Penicillium_neoechinulatum(FASTA, Guide tree) 
PV181578.1PV181578.1_Penicillium_viridicatum(PHYLIP) 
PV181578.1_PeniPV181578.1_Penicillium_viridicatum(HTML) 
PV181578.1_Penicillium_viridicatumPV181578.1_Penicillium_viridicatum(FASTA, Guide tree) 
PV181580.1PV181580.1_Penicillium_viridicatum(PHYLIP) 
PV181580.1_PeniPV181580.1_Penicillium_viridicatum(HTML) 
PV181580.1_Penicillium_viridicatumPV181580.1_Penicillium_viridicatum(FASTA, Guide tree) 
PV181583.1PV181583.1_Penicillium_melanoconidium(PHYLIP) 
PV181583.1_PeniPV181583.1_Penicillium_melanoconidium(HTML) 
PV181583.1_Penicillium_melanoconidiumPV181583.1_Penicillium_melanoconidium(Guide tree, FASTA) 
PV181584.1PV181584.1_Penicillium_melanoconidium(PHYLIP) 
PV181584.1_PeniPV181584.1_Penicillium_melanoconidium(HTML) 
PV181584.1_Penicillium_melanoconidiumPV181584.1_Penicillium_melanoconidium(Guide tree, FASTA) 
PV181588.1PV181588.1_Penicillium_polonicum(PHYLIP) 
PV181588.1_PeniPV181588.1_Penicillium_polonicum(HTML) 
PV181588.1_Penicillium_polonicumPV181588.1_Penicillium_polonicum(Guide tree, FASTA) 
PV181589.1PV181589.1_Penicillium_cyclopium(PHYLIP) 
PV181589.1_PeniPV181589.1_Penicillium_cyclopium(HTML) 
PV181589.1_Penicillium_cyclopiumPV181589.1_Penicillium_cyclopium(FASTA, Guide tree) 
PV181590.1PV181590.1_Penicillium_polonicum(PHYLIP) 
PV181590.1_PeniPV181590.1_Penicillium_polonicum(HTML) 
PV181590.1_Penicillium_polonicumPV181590.1_Penicillium_polonicum(FASTA, Guide tree) 
PV181591.1PV181591.1_Penicillium_cyclopium(PHYLIP) 
PV181591.1_PeniPV181591.1_Penicillium_cyclopium(HTML) 
PV181591.1_Penicillium_cyclopiumPV181591.1_Penicillium_cyclopium(FASTA, Guide tree) 
PV181593.1PV181593.1_Penicillium_melanoconidium(PHYLIP) 
PV181593.1_PeniPV181593.1_Penicillium_melanoconidium(HTML) 
PV181593.1_Penicillium_melanoconidiumPV181593.1_Penicillium_melanoconidium(Guide tree, FASTA) 
PV181595.1PV181595.1_Penicillium_freii(PHYLIP) 
PV181595.1_PeniPV181595.1_Penicillium_freii(HTML) 
PV181595.1_Penicillium_freiiPV181595.1_Penicillium_freii(FASTA, Guide tree) 
PV181598.1PV181598.1_Penicillium_viridicatum(PHYLIP) 
PV181598.1_PeniPV181598.1_Penicillium_viridicatum(HTML) 
PV181598.1_Penicillium_viridicatumPV181598.1_Penicillium_viridicatum(Guide tree, FASTA) 
PV181599.1PV181599.1_Penicillium_cyclopium(PHYLIP) 
PV181599.1_PeniPV181599.1_Penicillium_cyclopium(HTML) 
PV181599.1_Penicillium_cyclopiumPV181599.1_Penicillium_cyclopium(Guide tree, FASTA) 
PV181606.1PV181606.1_Penicillium_polonicum(PHYLIP) 
PV181606.1_PeniPV181606.1_Penicillium_polonicum(HTML) 
PV181606.1_Penicillium_polonicumPV181606.1_Penicillium_polonicum(FASTA, Guide tree) 
PV181607.1PV181607.1_Penicillium_freii(PHYLIP) 
PV181607.1_PeniPV181607.1_Penicillium_freii(HTML) 
PV181607.1_Penicillium_freiiPV181607.1_Penicillium_freii(Guide tree, FASTA) 
PV181666.1PV181666.1_Penicillium_melanoconidium(PHYLIP) 
PV181666.1_PeniPV181666.1_Penicillium_melanoconidium(HTML) 
PV181666.1_Penicillium_melanoconidiumPV181666.1_Penicillium_melanoconidium(FASTA, Guide tree) 
PV181747.1PV181747.1_Penicillium_viridicatum(PHYLIP) 
PV181747.1_PeniPV181747.1_Penicillium_viridicatum(HTML) 
PV181747.1_Penicillium_viridicatumPV181747.1_Penicillium_viridicatum(FASTA, Guide tree) 
PV181753.1PV181753.1_Penicillium_viridicatum(PHYLIP) 
PV181753.1_PeniPV181753.1_Penicillium_viridicatum(HTML) 
PV181753.1_Penicillium_viridicatumPV181753.1_Penicillium_viridicatum(FASTA, Guide tree) 
PV181904.1PV181904.1_Penicillium_melanoconidium(PHYLIP) 
PV181904.1_PeniPV181904.1_Penicillium_melanoconidium(HTML) 
PV181904.1_Penicillium_melanoconidiumPV181904.1_Penicillium_melanoconidium(Guide tree, FASTA) 
PV182166.1PV182166.1_Penicillium_solitum(PHYLIP) 
PV182166.1_PeniPV182166.1_Penicillium_solitum(HTML) 
PV182166.1_Penicillium_solitumPV182166.1_Penicillium_solitum(FASTA, Guide tree) 
PV182187.1PV182187.1_Penicillium_biforme(PHYLIP) 
PV182187.1_PeniPV182187.1_Penicillium_biforme(HTML) 
PV182187.1_Penicillium_biformePV182187.1_Penicillium_biforme(Guide tree, FASTA) 
PV182211.1PV182211.1_Penicillium_viridicatum(PHYLIP) 
PV182211.1_PeniPV182211.1_Penicillium_viridicatum(HTML) 
PV182211.1_Penicillium_viridicatumPV182211.1_Penicillium_viridicatum(FASTA, Guide tree) 
PV182225.1PV182225.1_Penicillium_cyclopium(PHYLIP) 
PV182225.1_PeniPV182225.1_Penicillium_cyclopium(HTML) 
PV182225.1_Penicillium_cyclopiumPV182225.1_Penicillium_cyclopium(FASTA, Guide tree) 
PV182252.1PV182252.1_Penicillium_biforme(PHYLIP) 
PV182252.1_PeniPV182252.1_Penicillium_biforme(HTML) 
PV182252.1_Penicillium_biformePV182252.1_Penicillium_biforme(FASTA, Guide tree) 
PV182301.1PV182301.1_Penicillium_biforme(PHYLIP) 
PV182301.1_PeniPV182301.1_Penicillium_biforme(HTML) 
PV182301.1_Penicillium_biformePV182301.1_Penicillium_biforme(Guide tree, FASTA) 
PV182332.1PV182332.1_Penicillium_polonicum(PHYLIP) 
PV182332.1_PeniPV182332.1_Penicillium_polonicum(HTML) 
PV182332.1_Penicillium_polonicumPV182332.1_Penicillium_polonicum(Guide tree, FASTA) 
PV182594.1PV182594.1_Penicillium_speluncae(PHYLIP) 
PV182594.1_PeniPV182594.1_Penicillium_speluncae(HTML) 
PV182594.1_Penicillium_speluncaePV182594.1_Penicillium_speluncae(FASTA, Guide tree) 
Yaourt_natYaourt nature_B_reverse(PHYLIP) 
Yaourt_nature_BYaourt nature_B_reverse(HTML) 
Yaourt_nature_B_reverseYaourt nature_B_reverse(FASTA, Guide tree) 
> Download taxon names association table

Multiple sequence alignment editor:
    
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Please cite:
  1. Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
  2. Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
  3. Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
  4. Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, Apr;17(4):540-52. (PubMed)


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