Processed file: input.fasta
Number of sequences: 5
Alignment assumed to be: Protein
New number of positions: 606 (selected positions are underlined in blue)
10 20 30 40 50 60
=========+=========+=========+=========+=========+=========+
Arabidopsis_tha MALLQRASYLRLYYLRLMGSRPRLFSSSLSPALHRHSSTLSSPPFSSPSPSFRLKFQLTS
E.coli ------------------------------------------------------------
Shigella_flexne ------------------------------------------------------------
Staph.aureus ------------------------------------------------------------
Staph.epidermid ------------------------------------------------------------
70 80 90 100 110 120
=========+=========+=========+=========+=========+=========+
Arabidopsis_tha VLSQRLIQRNAISSRFLSTEASQETTTSKGYSSEQIQVLEGLDPVRKRPGMYIGSTGS-R
E.coli --------------------------MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGT
Shigella_flexne --------------------------MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGT
Staph.aureus -----------------MVTALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSE-R
Staph.epidermid -----------------MVNTLSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSE-R
########################## #
130 140 150 160 170 180
=========+=========+=========+=========+=========+=========+
Arabidopsis_tha GLHHLVYEILDNAIDEAQAGYASKVDVVLHADGSVSVVDNGRGIPTDLHPATKKSSLETV
E.coli GLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVI
Shigella_flexne GLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVI
Staph.aureus GLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVI
Staph.epidermid GLHHLVWEIVDNSIDEALAGYASHIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVI
############################################################
190 200 210 220 230 240
=========+=========+=========+=========+=========+=========+
Arabidopsis_tha LTVLHAGGKFGGTSSGYSVSGGLHGVGLSVVNALSEALEVSVWRDGMEHKQNYSRGKPIT
E.coli MTVLHAGGKFDD--NSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQA
Shigella_flexne MTVLHAGGKFDD--NSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQA
Staph.aureus LTVLHAGGKFGG--GGYKVSGGLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQF
Staph.epidermid LTVLHAGGKFGG--GGYKVSGGLHGVGSSVVNALSQDLEVYVHRNGTIYHQAYKQGVPQF
############ #############################################
250 260 270 280 290 300
=========+=========+=========+=========+=========+=========+
Arabidopsis_tha TLTCRVLPLESKGTKGTSIRFWPDKEVFTTAIEFDHNTIAGRIRELAFLNPKVTISLKKE
E.coli PLAV----TGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDK
Shigella_flexne PLAV----TGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDK
Staph.aureus DLKE----VGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDE
Staph.epidermid DLKE----IGDTDKTGTAIRFKADKEIFTETTVYNYETLQKRIRELAFLNKGIQITLKDE
## ###################################################
310 320 330 340 350 360
=========+=========+=========+=========+=========+=========+
Arabidopsis_tha DDDPEKTQYSEYSFAGGLTEYVSWLNTDKNPIHD-VLGFRREINGATVDVALQWCSDAYS
E.coli RDGK---EDH-FHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQW-NDGFQ
Shigella_flexne RDGK---EDH-FHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQW-NDGFQ
Staph.aureus RDEENVREDS-YHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEVEIAIQY-NSGYA
Staph.epidermid REEE-VREDS-YHYEGGIKSYVDLLNENKEPLHDEPIYIHQSKDDIEVEIALQY-NSGYA
## ####################### ################# #####
370 380 390 400 410 420
=========+=========+=========+=========+=========+=========+
Arabidopsis_tha DTMLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHVREGLTCIV
E.coli ENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVV
Shigella_flexne ENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVV
Staph.aureus TNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAII
Staph.epidermid TNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKEDKDRLSGEDTREGLTAVV
############################################################
430 440 450 460 470 480
=========+=========+=========+=========+=========+=========+
Arabidopsis_tha SVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDILESIISKSLNAYKAAL
E.coli SVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARARE
Shigella_flexne SVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARARE
Staph.aureus SIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARV
Staph.epidermid SIKHGDPQFEGQTKTKLGNSEVRQVVDRLFSEHFERFLYENPSVGRIIVEKGIMASRARV
############################################################
490 500 510 520 530 540
=========+=========+=========+=========+=========+=========+
Arabidopsis_tha AAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGDSAGGSAKQGRDRRFQAI
E.coli AARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAI
Shigella_flexne AARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAI
Staph.aureus AAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAI
Staph.epidermid AAKKAREVTRRKSALDVSSLPGKLADCSSKNPEESEIFLVEGDSAGGSTKSGRDSRTQAI
############################################################
550 560 570 580 590 600
=========+=========+=========+=========+=========+=========+
Arabidopsis_tha LPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRYHKIIILTDADVDG
E.coli LPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDG
Shigella_flexne LPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDG
Staph.aureus LPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYHKIVIMTDADVDG
Staph.epidermid LPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-EFDISKARYHKIVIMTDADVDG
##################################### ######################
610 620 630 640 650 660
=========+=========+=========+=========+=========+=========+
Arabidopsis_tha AHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQYCYDDADLK----------
E.coli SHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG
Shigella_flexne SHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG
Staph.aureus AHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELD----------
Staph.epidermid AHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRELD----------
##################################################
670 680 690 700 710 720
=========+=========+=========+=========+=========+=========+
Arabidopsis_tha ------------------KITSNFPANAS-------------------------------
E.coli ATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDE
Shigella_flexne ATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDE
Staph.aureus ------------------KLKSELNPTPK-------------------------------
Staph.epidermid ------------------KLKQELNPSPK-------------------------------
###########
730 740 750 760 770 780
=========+=========+=========+=========+=========+=========+
Arabidopsis_tha ------------------------------------------------------------
E.coli QTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFIT
Shigella_flexne QTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFIT
Staph.aureus ------------------------------------------------------------
Staph.epidermid ------------------------------------------------------------
790 800 810 820 830 840
=========+=========+=========+=========+=========+=========+
Arabidopsis_tha -----------------------------------------Y---------NIQRFKGLG
E.coli GGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLG
Shigella_flexne GGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLG
Staph.aureus -----------------------------------------W---------SIARYKGLG
Staph.epidermid -----------------------------------------W---------SIARYKGLG
#########
850 860 870 880 890 900
=========+=========+=========+=========+=========+=========+
Arabidopsis_tha EMMPEQLWETTMNPETRILKQLVVDDIAEANMTFSSLMGARVDVRKELIKNAATRINLQR
E.coli EMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA--LKAAN
Shigella_flexne EMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENA--LKAAN
Staph.aureus EMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNA---VYAN
Staph.epidermid EMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNA---VYAN
#####################################################
===
Arabidopsis_tha LDI
E.coli IDI
Shigella_flexne IDI
Staph.aureus LDF
Staph.epidermid LDF
Parameters used Minimum Number Of Sequences For A Conserved Position: 3 Minimum Number Of Sequences For A Flanking Position: 4 Maximum Number Of Contiguous Nonconserved Positions: 8 Minimum Length Of A Block: 10 Allowed Gap Positions: None Use Similarity Matrices: Yes
Flank positions of the 10 selected block(s) Flanks: [91 116] [120 192] [196 242] [250 302] [312 334] [338 354] [356 577] [579 650] [679 689] [832 893] New number of positions in input.fasta-gb: 606 (67% of the original 903 positions)