Equidae_Ho      ---------------------------------ATTtATTAtgtGCTGAATAGctcTCCT
Suina_Pig       ttgttcaatgaagaaagattcagatctatcccaATTcATTAcagGCTGAATAGgatTCCT
Cervidae_D      ------------------------------------------------------------
Bovidae_Co      ------------------------------------------------------------
Caprinae_G      ------------------------------------------------------------
Caprinae_S      ------------------------------------------------------------

Equidae_Ho      cGTTATGaAcccATcTaCTACCAACATAGActAGcTGtACTAATTAATAATCAAcaTaTG
Suina_Pig       aGTTATGgAtttATtTtCTACCAACATAGAtCAGcTGCAtcAAcTAATAAcCAATTTaTc
Cervidae_D      -------------------------------CAGTTGCACTAATTAATAATCAATTTCTG
Bovidae_Co      -------------------------------CAGTTGCACTAATTAATAATCAATTTCTG
Caprinae_G      -------------------------------CAGTTGCACTAATTAATAATCAATTTCTG
Caprinae_S      -------------------------------CAGTTGCACTAATTAATAATCAATTTCTG

Equidae_Ho      CCtTACCaATATTATGCAAgaCCAGcTGCAGTTAGGcCACaTGtCCAAATTCcTCAATGG
Suina_Pig       CCtTACCCATtTTATGCAAgGCCAGTTGCAGTTAGGcCACaTGCCCAAAaaCcTCAATGG
Cervidae_D      CCATACCCATATTATGCAAAGCCAGgTGCAGTTAGGTCACCTGCCCAAATTCTcCAATGG
Bovidae_Co      CCATACCCATATTATGCAAAGCCAGcTGCAGTTAGGTCACCTGCCCAAATTCTTCAATGG
Caprinae_G      CCATACCCATATTATGCAAAGCCAGTTGCAGTTAGGTCACCTGCCCAAATTCTTCAgTGG
Caprinae_S      CCATACCCATATTATGCgAAGCCAGTTGCAGTTAGGTCACCTGCCCAAAcTCTTCAATGG

Equidae_Ho      CAAGTCcTGCCAAATAt------------------------CtAcCCAtCcACtgTGGtA
Suina_Pig       CAAGaCcaGCCAAATgt------------------------CtAcCCAcCTACtggGGCA
Cervidae_D      CAAGTCTTGCCAAATACcGTGCCcGCCAAGTCCTGCCAAGcCCAaCCAACTACCcTGGCA
Bovidae_Co      CAAGTtTTGtCAAATACTGTGCCTGCCAAGTCCTGCCAAGcCCAGCCAACTACCATGGCA
Caprinae_G      CAAGTtTTGCCAAATACTGcGCCTGCCAAGTCCTGCCAAGACCAGCCAACTACCATGGCA
Caprinae_S      CAAGTtTTGCCAAATACTGTGCCTGCCAAGTCCTGCCAAGACCAGCCAACTACCATGGCA

Equidae_Ho      CGTCAtCCACgCCCgCATccATCATTTATtGCCATTCCtCCAAAGArActTCAGGAgAAA
Suina_Pig       CGTCgCCCACgCCCACATgcATCATTTATtGCCATcCCcCCAAAGAAAAATCAGGATAcA
Cervidae_D      CGTCACCCACACCCACgTTTATCATTTATGGCCATTCCgCCAAAGAAAAATCAGGATAAA
Bovidae_Co      CGTCACCCACACCCACATTTATCATTTATGGCCATTCCACCAAAGAAAAATCAGGATAAA
Caprinae_G      CGTCACCCACACCCACATTTATCATTTATGGCCATTCCACCAAAGAAAgATCAGGATAAA
Caprinae_S      CaTCACCCACACCCACATTTATCATTTATGGCCATTCCACCAAAGAAAgATCAGGATAAA

Equidae_Ho      ACAGtcATCCCTAagATCAATACtATTGCTACTGTTGAGCCTACAcc------TAttCCT
Suina_Pig       ACAGccATCCCTgCCATtAATtCCATTGCTACTGTTGAGCCTACAcT------TAtACCT
Cervidae_D      ACAGAcATCCCTACCATCAAcACCATTGCTACTGTTGAGtCTACAAT------TACACCT
Bovidae_Co      ACAGAAATCCCTACCATCAATACCATTGCTAgTGgTGAGCCTACAAg------TACACCT
Caprinae_G      ACAGAAATCCCTACCATCAATACCATTGCTAgTGcTGAGCCTACAgTACACAGTACACCT
Caprinae_S      ACAGAAATCCCTgCCATCAATACCATTGCTAgTGTTGAGCCTACAgTACACAGTACACCT

Equidae_Ho      ACCcCtGAAcCAAcAGTGAACAaTGcAGtcAtTCCAGAcGCcTCCTCAGAATTCaTcATc
Suina_Pig       ACCACtGAAcCAgTAGTGAACACTGTAGtaAtTCCAGAAGCTgCCTCAGAATTCcTcATc
Cervidae_D      ACCACCGAAGCAATAGTGgACACTGTAGcTAcTCCAGAAGCTTCCTCAGAAg---TTATT
Bovidae_Co      ACCACCGAAGCAgTAGaGAgCACTGTAGcTAcTCtAGAAGCTTCtcCAGAAg---TTATT
Caprinae_G      ACCACCGAAGCAATAGTGAACACTGTAGATAATCCAGAAGCTTCCTCAGAAT---cTATT
Caprinae_S      ACCACtGAAGCAgTAGTGAACACgGTAGATAATCCAGAAGCTTCCTCAGAAT---cTATT

Equidae_Ho      GCcAGCaCACCTGAGACtAcCACAGTtCcAGTTACTTCAcCtGTGGTCTAA
Suina_Pig       aCaAaCaCACCTGAGACCAcCgCAGTCCAAGTctCTTCAACCGTGGTCTAA
Cervidae_D      GaGAGtGCACCTGAGACCAAgACAGaCCAAGTTACTTCAACCGTGGTCTAA
Bovidae_Co      GaGAGCcCACCTGAGAtCAACACAGTCCAAGTTACTTCAACCGcGGTCTAA
Caprinae_G      GtGAGtGCACCTGAGACCAACACAGcCCAAGTTACTTCAACCGaGGTCTAA
Caprinae_S      GCGAGtGCACCTGAGACCAACgCAGcCCAAGTTACTaCAACCGaGGTCTAA