Processed file: input.fasta
Number of sequences: 3
Alignment assumed to be: DNA
New number of positions: 2471 (selected positions are underlined in blue)
10 20 30 40 50 60
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 ------------------------ACGGGAGCAAATCCGTGAAAGATTTAT---TAAAGT
NC_000962.3:759 TTGGCAGATTCCCGCCAGAGCAAAACAGCCGCTAGTCCTAGTCCGAGTCGCCCGCAAAGT
NC_000913.3:418 ------------------------ATGGT--TTACTCCTATACCGA--------------
###############
70 80 90 100 110 120
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 TTCTGAAAGCGCAGACTAAAACCGAAGAG---------------TTTGAT--GCGATCAA
NC_000962.3:759 TCCTCGAATAAC--TCCGTACCCGGAGCGCCAAACCGGGTCTCCTTCGCTAAGCTGCGCG
NC_000913.3:418 ----GAAAAAAC-----GTATTCGTAAGG-------------ATTTTGGTAAACGTCCAC
############ ########
130 140 150 160 170 180
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 AATTGCTCTGGCTTC---------------GCCAGACATGATCCGTTC--ATGGTCTTTC
NC_000962.3:759 AACCACTTGAGGTTCCGGGACTCCTTGACGTCCAGAC-CGATTCGTTCGAGTGGCTGATC
NC_000913.3:418 AAGTTCTGGATGTACCTTATCTCCTTTCTATCCAGCT-TGACTCGTTTCAGAAATTTATC
############### ########## ##########
190 200 210 220 230 240
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 GG---------------------------------------------TGAAGTTAAAAAG
NC_000962.3:759 GGTTCGCCGCGCTGGCGCGAATCCGCCGCCGAGCGGGGTGATGTCAACCCAGTGGGTGGC
NC_000913.3:418 GA------------------------------GCAAGATCCTG-AAGGGCAGT--ATGGT
# #####
250 260 270 280 290 300
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 CCGGAAACCATCAACTACCGTACGTTCAAACCTGAGCGTGACGGC---------------
NC_000962.3:759 CTGGAAGAGGTGCTCTACGAGCTGTCTCCGATCGAGGACTTCTCCGGGTCGATGTCGTTG
NC_000913.3:418 CTGGAAGCTGCTTTCCGTTCCGTATTCCCGATTCAGAGCTACAGCGGTAATTCCGAGCTG
#############################################
310 320 330 340 350 360
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 ---CTTTTCTGCGCCCGTATCTTTGGGCC---GGTAAAAGACTACGAGTGC---------
NC_000962.3:759 TCGTTCTCTGACCCTCGTTTCGACGATGTCAAGGCACCCGTCGACGAGTGCAAAGACAAG
NC_000913.3:418 CAATACGTCAGCTACCGCCTTGGCGAACCGGTGTTTGACGTCCAGGAATGTCAAATCCGT
################## ##################
370 380 390 400 410 420
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 ---------------------CTGTGCGGTA-------------AGTACAAGCGCCTGAA
NC_000962.3:759 GACATGACGTACGCGGCTCCACTGTTCGTCA-------CCGCCGAGTTCATCAACA-ACA
NC_000913.3:418 GGCGTGACCTATTCCGCACCGCTGCGCGTTAAACTGCGTCTGGTGATCTATGAGCGCGAA
##########
430 440 450 460 470 480
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 ACATCGT----------------------------GGTGTTATTTGTGAGAAGTGCGGCG
NC_000962.3:759 ACACCGG-------------TGAGATCAAGAGTCAGACGGTGTTCATGGGTGACTTCCCG
NC_000913.3:418 GCGCCGGAAGGCACCGTAAAAGACATTAAAGAACAAGAAGTCTACATGGGCGAAATTCCG
####################
490 500 510 520 530 540
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 TTGAAGTGACCCAGACCAAAGTACGCCG--------------TGAGCGTATGGGCCACAT
NC_000962.3:759 ATGA--TGACC--GAGAAGGGCACGTTCATCATCAACGGGACCGAGCGTGTGGTGGTCAG
NC_000913.3:418 CTCA--TGACA--GACAACGGTACCTTTGTTATCAACGGTACTGAGCGTGTTATCGTTTC
#### ########### #################
550 560 570 580 590 600
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 CGAGCTAGCGTCCCCGACTGCTCACATCTGGTTCCTGAAATCGCTGCCGTCCCGTATCGG
NC_000962.3:759 CCAGCTGGTGCGGTCGCCCGGG-GTGTACTTCGAC-GAGACCATTGACA---------AG
NC_000913.3:418 CCAGCT-GCACCGTAGTCCGGGCGTCTTCTTTGACTCCGACAAAGGTAA---------AA
###### ############### ############ ##########
610 620 630 640 650 660
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 TCTGCTGCTC-GATATGCCGCTGCGCGATATCGAACGCGTACTGTACTTCGAATCTTATG
NC_000962.3:759 TCCACC-----GACAAGACGCTGCACAGCGTCAAGGTGATCCCGAGCCGCGGCGCGTGGC
NC_000913.3:418 CCCACTCTTCGGGTAAAGTGCTGTATAACGCGCGTATCATCCCTTACCGTGGTTCCTGGC
#################################################
670 680 690 700 710 720
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 TGGTTATCGAAGGCGGTATGACCAAC---------------CTGGAACGTCAACAGATCC
NC_000962.3:759 TCGAGTTTGACGTCGACAAGCGCGACACCGTCGGCGTGCGCATCGACCGCAAACG----C
NC_000913.3:418 TGGACTTCGAATTCGATCCGAAGGACAACCTGTTCGTACGTATCGACCGTCGCCGTAAAC
########################## #############
730 740 750 760 770 780
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 TGACTGAAGAGCAGTAT-CTGGAC---GCGCTGGAAGAGTTCGGTGACGAATTCGACGCG
NC_000962.3:759 CGGCAACCGGTCACCGTGCTGCTCAAGGCGCTGGGCTGGACCAGCGAGCAGATTGTCGAG
NC_000913.3:418 TG-CCTGCGACCATCATTCTGCGC---GCCCTGAACTACACCACAGAGCAGATCCTCGAC
############## #################################
790 800 810 820 830 840
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 AAGATGGGGGCGGAAGCTATCC----AGGCCCTGCTGAAGAGCATGGATCTGGAGCAAGA
NC_000962.3:759 CGGTTCGG-------GTTCTCC--------------------------------------
NC_000913.3:418 CTGTTCTTTGAAAAAGTTATCTTTGAAATCCGTGATAACAAGC-TGCAGATGGAACTGGT
########
850 860 870 880 890 900
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 GTGTGAAACTCTGCGCGAAGAGCTG------------AACGAAACCAACTCCGAA-----
NC_000962.3:759 ----GAGATCATGCG----------------------ATCGACGC---------------
NC_000913.3:418 GCCGGAACGCCTGCGTGGTGAAACCGCATCTTTTGACATCGAAGCTAACGGTAAAGTGTA
###########
910 920 930 940 950 960
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 --------------------------------------ACCAAGCGTAAAAAGCTGACCA
NC_000962.3:759 --------------------------------------------TGGAGAAGGACAAC--
NC_000913.3:418 CGTAGAAAAAGGCCGCCGTATCACTGCGCGCCACATTCGCCAGCTGGAAAAAGACGAC--
#############
970 980 990 1000 1010 1020
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 AGCGTATCAAACTGCTGGAAGCCTTCGTTCAGTCTGGCAACAAGCCAGAGTGGATGATCC
NC_000962.3:759 ------------------------------------------------------------
NC_000913.3:418 -----GTCAAACTGATCGAAGTCCCGGTTGAGTACATCG--CAGGTAAAGTGGTTGCTAA
1030 1040 1050 1060 1070 1080
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 TGACCGTTCTGCCGGTTCTGCCGCCA----GATCTGCG----------------------
NC_000962.3:759 ------------------------------------------------------------
NC_000913.3:418 AGACTATATTGATGAGTCTACCGGCGAGCTGATCTGCGCAGCGAACATGGAGCTGAGCCT
1090 1100 1110 1120 1130 1140
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 ---TCCGCTGGTTCCGCTG---------GATGGTGGTCGTTTCGCCACGTCAGATCTGAA
NC_000962.3:759 ---ACCGTCGGCACCGACG-----------------------------------------
NC_000913.3:418 GGATCTGCTGGCTAAGCTGAGCCAGTCTGGTCACAAGCGTATCGAAACGCTGTTCACCAA
###############
1150 1160 1170 1180 1190 1200
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 CGATCTGTATCGT------------------------CGCGTCATTAACCGTAACAACCG
NC_000962.3:759 ------------------------------------------------------------
NC_000913.3:418 CGATCTGGATCACGGCCCATATATCTCTGAAACCTTACGTGTCGACCCAACTAACGACCG
1210 1220 1230 1240 1250 1260
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 TCTGAAGCGTCTGCTGG--ATCTGGCTGCGCCGGACATCATCGTACGCAACGAAAAACGT
NC_000962.3:759 -----AGGCGCTGTTGGACATCT-----------ACCGCAAGCTGCGTCCGGGCGAGCCC
NC_000913.3:418 TCTGAGCGCACTGGTAGAAATCT-----------ACCGCATGATGCGCCCTGGCGAGCCG
##########################
1270 1280 1290 1300 1310 1320
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 ATGCTGCAGGAAGCGGTTGACGCCCTGTTGGATAAC--GGTCGTCGCGGTCGTGCGATCA
NC_000962.3:759 CCGACCAAAGAGTCAGCGCAGACGCTGTTGGAAAACTTGTTCTTCAAGGAGAAGCG----
NC_000913.3:418 CCGACTCGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCG----
#################################### ##################
1330 1340 1350 1360 1370 1380
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 CCGGTTCTAACAAGCGTCCTCTGAAATCTTTGGCCGACATGATCAAAGGTAAGCAGGGTC
NC_000962.3:759 ------CTACGACCTGGCCCGCG------TCGGTCGCTAT-----AAGGTCAAC------
NC_000913.3:418 ------TTATGACTTGTCTGCGG------TTGGTCG-TATG----AAGTTCAAC------
################
1390 1400 1410 1420 1430 1440
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 GTTTCCGTCAGAACCTGCTCGGTAAGCGTGTTGACTACTCCGGTCGTTCTGTAATCACCG
NC_000962.3:759 --------AAGAA---GCTCGGGCTGCATGTCGGCGAGCCC----ATCACGTCGTCGACG
NC_000913.3:418 --------CGTTCTCTGCTGCGCGAAGAAATCGAAGGTTCCGGT-ATCCTG---------
#########################
1450 1460 1470 1480 1490 1500
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 TAGGTCCATACCTGCGTCTGCACCAGTGCGGTCTGCCGAAGAAAATGGCGCTGGAGCTGT
NC_000962.3:759 CTG-------------------------------ACCGAAGAAGACGTCGTGGCCACCAT
NC_000913.3:418 ----------------------------------AGCAAAGACGACATCATTGATGTTAT
########################
1510 1520 1530 1540 1550 1560
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 TCAAA---CCGTTCATCTACGGCAAGCTGGAACTGCG-TGGCCTTGCC-ACCACCATCAA
NC_000962.3:759 CGAATATCTGGTCCGCTTGCACGAGGGTCAGACCACGATGACCGTTCCGGGCGGCGTCGA
NC_000913.3:418 GAAAAAGCTCAT-----------------------CGATATCCGTAAC-G-----GTAAA
##### ##########
1570 1580 1590 1600 1610 1620
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 AGCCGCGAAGAAAATGGTTGAGCGTGA-------AGAAGCTGTCGTTTGGGATATCCTTG
NC_000962.3:759 GGTGCCGGTGGAAACCGACGACATCGACCACTTCGGCAACCGCCGCCTGCG-TACGGTCG
NC_000913.3:418 GGC-------GAAGTCGATGATATCGACCACCTCGGCAACCGTCGTATCCG-TTCCGTTG
################# ################# ########
1630 1640 1650 1660 1670 1680
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 ACGAAGTTA------------TCCGCGAACACCCGGTACTGCTGAACCGTGCA-------
NC_000962.3:759 GCGAGCTGATCCAAAACCAGATCCGGGTCGGCATGTCGCGGATGGAGCGGGTGGTCCGGG
NC_000913.3:418 GCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCGGTGAAAG
####### ##############################
1690 1700 1710 1720 1730 1740
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 -----CCGACTCTGCACCGTCTGGGTATCCAGGCATTTGAACCGGTACTGATCGAAGGTA
NC_000962.3:759 AGCGGATGACCACCCAGGACGTGGAGGCGATCACACC---GCAGACGTTGATCAA-----
NC_000913.3:418 AGCGTCTGTCTCTGGGCGATCTGGATACCCTGATGCC---ACAGGATATGATCAA-----
############################## ###############
1750 1760 1770 1780 1790 1800
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 AAGCTATCCAGCTGCACCC-GCTGGTTTGTGCGGCATATAACGCCGACTTCGATGGTGAC
NC_000962.3:759 --------------CATCCGGCCGGTGGTCGCCGCGATCAAGGAGTTCTTCGGCACCAGC
NC_000913.3:418 --------------CGCCAAGCCGATTTCCGCAGCAGTGAAAGAGTTCTTCGGTTCCAGC
########################################
1810 1820 1830 1840 1850 1860
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 CAGATGGCT--GTTCACGTACCGCTGACGCTGGAAGCCCAGCTTGAAGCGCGTGCGCTGA
NC_000962.3:759 CAGCTGAGCCAATTCATGGACC------------AGAACAACC-----------CGCTGT
NC_000913.3:418 CAGCTGTCTCAGTTTATGGACC------------AGAACAACC-----------CGCTGT
######### ########### ######
1870 1880 1890 1900 1910 1920
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 TGATGTCTACCAACAACATCCTGTCTCCGGCGAACGGCGAACCTATCATCGTTCCGTCTC
NC_000962.3:759 CGGGGTTGACCCACA-----------------AGCGCCGACTGT----------------
NC_000913.3:418 CTGAGATTACGCACA-----------------AACGTCGTATCT----------------
############### ############
1930 1940 1950 1960 1970 1980
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 AGGACGTGGTATTGGGTCTGTACTACATGACCCGTGACTGTGTTAACGCCAAAGGCGAAG
NC_000962.3:759 ------CGGCGCTGGGGCCCGGCGGTCTGTCACGTGAGCGTGCCGGGCTGGAGGTCCGCG
NC_000913.3:418 ------CCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAG
####################################################
1990 2000 2010 2020 2030 2040
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 GCATGGTGCTGACT---------------GGCCCGAAAGAAG---CTGAGCGTATC--TA
NC_000962.3:759 ACGTGCACCCGTCGCACTACGGCCGGATGTGCCCGATCGAAACCCCTGAGGGGCCCAACA
NC_000913.3:418 ACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACA
############# ############ ########### ##
2050 2060 2070 2080 2090 2100
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 TCGCGCAGGTCTGGCCTCTCTGCATGCGCGCGTTAAAGTGCGTATCACTGAATATGAAAA
NC_000962.3:759 TCGGTCTGATCGGCTCGCTGTCGGTGTACGC--------GCGGGTCAACCCGTT------
NC_000913.3:418 TCGGTCTGATCAACTCTCTGTCCGTGTACGC--------ACAGACTAACGAATA------
############################### ##############
2110 2120 2130 2140 2150 2160
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 AGATGAAAACGGCGAATTCGTTG------CGCACACCAGCCTGAAAGACACGACCGTTGG
NC_000962.3:759 ------------CGGGTTCATCGAAACGCCGTACCGCAAGGTGGTCGACGGCGTGGTTAG
NC_000913.3:418 ------------CGGCTTCCTTGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAAC
########### ###############################
2170 2180 2190 2200 2210 2220
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 TCGCGCCATTCTGTGGATGATCG-TACCGAAAGGTCTGCCTTTCTCCATCGTCAACCAGG
NC_000962.3:759 CGACGAGATCGTGTACCTGACCGCCGACGAGGAG----------------GACCGCCACG
NC_000913.3:418 TGACGAAATTCACTACCTGTCTGCTATCGAAGAA----------------GGCAACTACG
####################### ##########
2230 2240 2250 2260 2270 2280
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 CGCTGGGCAAGAAAGCGATCTCCAAAATGCTGAACACTTGCTACCGTATTCTGGGCCTGA
NC_000962.3:759 TGGTGGCACAG---------GCCAATTCGCCGATC-----------------------GA
NC_000913.3:418 TTATCGCCCAG---GCGAACTCCAACTTG-----------------------------GA
########### ##
2290 2300 2310 2320 2330 2340
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 AACCGACCGTTATTTTTGCGGACCAGACGATGTACACCGGCTTTGCTT-------ATGCA
NC_000962.3:759 TGCGGACGGTCGCTTCGTCGAGCCGCGCGTGCTGGTCCGCCGCAAGGCGGGCGAGGTGGA
NC_000913.3:418 TGAAGAAGGCCACTTCGTAGA---AGACCTGGTAACTTGCCGTAGCAAAGGCGA-ATCCA
##################### ################# ####
2350 2360 2370 2380 2390 2400
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 GCGCGTTCAGGTGCGTCCGTTGGTATTGATGACATGGTCATCCCGGAGAAAAAACACGAG
NC_000962.3:759 GTACGTGC--CCTCGTCTGAGG---TGGACTACATGGACGTCTC----------------
NC_000913.3:418 GCTTGTTCAGCCGCGACC-AGG---TTGACTACATGGACGTATC----------------
######## ###################
2410 2420 2430 2440 2450 2460
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 ATCATCTCTGAGGCGGAAGCTGAAGTTGCTGAGATCCAGGAGCAGTTCCAGTCTGGTCTG
NC_000962.3:759 --GCCCCGCCAGATGGTGTCGGTGGCCACCGCGAT--------GATTCCCTTCCTG----
NC_000913.3:418 --CACCCAGCAGGTGGTATCCGTCGGTGCGTCCCT--------GATCCCGTTCCTG----
############################## #############
2470 2480 2490 2500 2510 2520
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 GTAACCGCTGGCGAACGCTATAACAAAGTTATCGATATCTGGGCTGCGGCGAACGATCGT
NC_000962.3:759 ------------GAGCACGACGAC---------------------------GCCAACCGT
NC_000913.3:418 ------------GAACACGATGAC---------------------------GCCAACCGT
############ #######
2530 2540 2550 2560 2570 2580
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 GTATCTAAAGCGATGATGGATAACCTGCAAACCGAAACCGT---GATTAACCGTGACGGC
NC_000962.3:759 GCCC------TCATGGGGGCAAACATGCAGCGCCAGGCGGTGCCGCTGGTCCGTAGC---
NC_000913.3:418 GCAT------TGATGGGTGCGAACATGCAACGTCAGGCCGTTCCGACTCTGCGCGCT---
#### ############################### #############
2590 2600 2610 2620 2630 2640
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 CAGGAAGAGCAGCAGGTTTCCTTCAACAGCATCTACATG------------ATGGCCGAC
NC_000962.3:759 ---GAGGCCCCGCTGGTG---------GGCACCGGGATGGAGCTGCGCGCGGCGATCGAC
NC_000913.3:418 ---GATAAGCCGCTGGTT---------GGTACTGGTATGGAACGTGCTGTTGCCGTTGAC
############## ########### ###
2650 2660 2670 2680 2690 2700
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 TCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTCTGATG
NC_000962.3:759 GCCGGCGACGTCGTCGTCGCCGAAGAAA---------------------GCGGCGTCATC
NC_000913.3:418 TCCGGTGTAACTGCGGTAGCTAAACGTG---------------------GTGGTGTCGTT
######################## ###########
2710 2720 2730 2740 2750 2760
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 GCGAAGC---CGGATGGCTCCATCATCGAAACGCCAATCACCGCGAACTTCCGTGAAGGT
NC_000962.3:759 GAGGAGGTGTCGGCCGACTACATCACTGTGATGCACGACAACG-----------------
NC_000913.3:418 CAGTACG---TGGATGCTTCCCGTATCGTTATCAAAGTTAACG-------------AAGA
####### #################################
2770 2780 2790 2800 2810 2820
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 CTGAACGTACTCCAGTACTTC----ATCTCCACCCACGGTGCGCGTAAAGGTCTGGCGGA
NC_000962.3:759 ------GCACCCGG--------------CGTACCTACCGGATGCGCAA--GTTTGCCCGG
NC_000913.3:418 CGAGATGTATCCGGGTGAAGCAGGTATCGACATCTACAACCTGACCAA--ATACACCCGT
################# ##########
2830 2840 2850 2860 2870 2880
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 TACCGCACTGAAAACCGCGAACTCCGGTTACCTGACTCGTCGTCTGGTTGAC--GTCGCG
NC_000962.3:759 TCCAACCACGGCACTTGCGCCAACCAGTGCCCCATCGTGGACGCGGGCGACCGAGTCGAG
NC_000913.3:418 TCTAACCAGAACACCTGTATCAACCAGATGCCGTGTGTGTCTCTGGGTGAACCGGTTGAA
#################################################### ######
2890 2900 2910 2920 2930 2940
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 CAGGATCTGGTAGTGACCGAAGATGACTGTGGTACGCACGAAGGTATCCTGATGACCCCG
NC_000962.3:759 GCCGGTCAGGTGATCGCCGACGGTCCCT--------------------GTACTGACGACG
NC_000913.3:418 CGTGGCGACGTGCTGGCAGACGGTCCGT--------------------CCACCGACCTCG
############################ #######
2950 2960 2970 2980 2990 3000
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 GTTATCGAGGGTGGCGACGTGAAAGAGCCGCTGCGTGACCGCGTTCTGGGTCGTGTGACG
NC_000962.3:759 GCGA-----GATGGCGCTGGGCAAGAACCTGCTGGTGGCC----ATCATGCCGTGGGAGG
NC_000913.3:418 GTGA-----ACTGGCGCTTGGTCAGAACATGCGCGTAGCG----TTCATGCCGTGGAATG
#### ############################### ################
3010 3020 3030 3040 3050 3060
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 GCGGAAGATGTGCTGAAACCGGGTACCGCGGACATTCTGGTTCCACGCAACACGCTGCTG
NC_000962.3:759 GCCACAACT----------------ACGAGGACGCGATCATCCTGTCCAACCGCCTGGTC
NC_000913.3:418 GTTACAACT----------------TCGAAGACTCCATCCTCGTATCCGAGCGTGTTGTT
######### ##################################
3070 3080 3090 3100 3110 3120
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 CACGAACAGTGGTGTGACCTGCTGGAAGCAAACTCCGTTGACGCCGTTAAAGTGCGTTCT
NC_000962.3:759 GAAGAG---------GACGTGCT---------CACCTCGATCCACATCGAGGAGCATGAG
NC_000913.3:418 CAGGAA---------GACCGTTT---------CACCACCATCCACATTCAGGAACTGGCG
##### ############################
3130 3140 3150 3160 3170 3180
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 GTTGTATCCTGCGACACCGACTTTGGT--GTATGTGCGCACTGCTATGGCCGTGACCTGG
NC_000962.3:759 ATCGATGCTCGCGACACCAAGCTGGGTGCGGAGGAGATCACCCGCG--------------
NC_000913.3:418 TGTGTGTCCCGTGACACCAAGCTGGGTCCGGAAGAGATCACCGCTG--------------
########################### ############
3190 3200 3210 3220 3230 3240
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 CGCGTGGCCACATCATCAACAAAGGTGAAGCTATCGGCGTTATCGCGGCACAGTCCATCG
NC_000962.3:759 ---------ACATCCCGAACATCTCCGACGAG------GTGCTCGCCGACCTG------G
NC_000913.3:418 ---------ACATCCCGAACGTGGGTGAAGCT------GCGCTCTCCAAACTG------G
####################### ############### #
3250 3260 3270 3280 3290 3300
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 GTGAACCGGGTACACAGCTGACGATGCGTACGTTCCACATCGGTGGTGCGGCATCGCGTG
NC_000962.3:759 ATGAGCGGGGCAT-----------------CGTG-CGCATCGGTGCCGAG-----GTTCG
NC_000913.3:418 ATGAATCCGGTAT-----------------CGTT-TACATTGGTGCGGAA-----GTGAC
############ ############### #####
3310 3320 3330 3340 3350 3360
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 CGGCTGCTGAATCCAG--CATCCAGGTTAAGAACAAAGGTAGCATCAAGCT--CAGCAAC
NC_000962.3:759 CGACGGGGACATCCTGGTCGGCAAGGTCACCCCGAAGGGTGAGACCGAGCTGACGCCGGA
NC_000913.3:418 CGGTGGCGACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGA
################ ################################# #######
3370 3380 3390 3400 3410 3420
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 GTGAAGTCGGTTGTGAACT-CCAGCGGTAAACTGGTTATCACTTCTCGTAACACCGAACT
NC_000962.3:759 GGAGCGGCTGCTGCGTGCCATCTTCGGTGAGAAGGCCCGCGAGGTGCGCGACACTTCGCT
NC_000913.3:418 AGAAAAACTGCTGCGTGCGATCTTCGGTGAGAAAGCCTCTGACGTTAAAGACTCTTCTCT
################## ########################################
3430 3440 3450 3460 3470 3480
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 GAA---GCTGATCGACGAATTCGGTCGTACCAAAGAGAGCTATA---AAGTGCCTTATGG
NC_000962.3:759 GAAGGTGCCGCACGGCGAATCCGG------CAAGGTGATCGGCATTCGGGTGTTTTCCCG
NC_000913.3:418 GCGCGTACCAAACGGTGTATCCGG------TACGGTTATCGACGTTCAGGTCTTTACTCG
### ################## ############## #############
3490 3500 3510 3520 3530 3540
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 CGCTGTCATGGCGAAAGGTGATGGCGAGCAGGTTGCCG-------GCGGCGAAACCGTGG
NC_000962.3:759 CGAGGACGAGGA----------------CGAGTTGCCG----------------------
NC_000913.3:418 CGATGGCGTAGAAAAAGACAAACGTGCGCTGGAAATCGAAGAAATGCAGCTCAAACA-GG
########### ##########
3550 3560 3570 3580 3590 3600
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 CAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTGAGTGGTTTCATCCGCTTC-
NC_000962.3:759 ------------------------------------------------------------
NC_000913.3:418 CGAAGAAAGACCTGTCTGAAGAACTGCAGATCCTCGAAGCGGGTCTGTTCAGCCGTATCC
3610 3620 3630 3640 3650 3660
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 --ACTGACATGATCGACGGTCAGACCATTACGCGTCAGACCGACGAACTGACCGGTTTGT
NC_000962.3:759 --------------GCCGGTG------------------TCAACGAGCT----GGTGCGT
NC_000913.3:418 GTGCTGTGCTGGTAGCCGGTGGCGTTGAAGCTGAGAAGCTCGACAAACT----GCCGCGC
3670 3680 3690 3700 3710 3720
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 CTTCGCTGGTGGTTCTGGATTCGGCTGAACGTACTACCGGTGGTAAA-------------
NC_000962.3:759 GT----------------------------------------------------------
NC_000913.3:418 GATCGCTGGCTG----GAGCTGGGCCTGACAGACGAAGAGAAACAAAATCAGCTGGAACA
3730 3740 3750 3760 3770 3780
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 -------GATCTGCGTCCGGCGCTGAAAATCGT--------TGATGCTCAGGGTAATGAC
NC_000962.3:759 ------------GTATGTGGCTCAGAAACGCAA---------------------------
NC_000913.3:418 GCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACG
###################
3790 3800 3810 3820 3830 3840
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 GTTCT-GATCCCGGGTACCGATATGCCTGCGCAGTACTTCCTGCCGGGTAAAGCGATTGT
NC_000962.3:759 ------GATCTCCGA---------------------------------------------
NC_000913.3:418 CCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATT---GTTAAGGT
3850 3860 3870 3880 3890 3900
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 ACAGCTGGAAGATGGCGTACAGATCAGTTCTGGTGACACCCTGGCGCGTATTCCTCAGGA
NC_000962.3:759 ------------------------------CGGTGACAAGCTGGCCGGCCGGC-------
NC_000913.3:418 ATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTC-------
######################
3910 3920 3930 3940 3950 3960
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 ATCCGGCGGTACCAAGGATATCACCGGTGGTCTGCCGCGCGTTGCGGACCTGTTCGAAGC
NC_000962.3:759 -----ACGGCAACAAGGGCGTGATCGGCAAGATCCTGCCGGTTGAGGACAT---------
NC_000913.3:418 -----ACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATAT---------
#############################################
3970 3980 3990 4000 4010 4020
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 GCGTCGTCCGAAAGAACCGGCCATTCTGGCGGAAATCGCAGGTATCGTTTCCTTCGGTAA
NC_000962.3:759 --GCCGTTCCTTGCCGACGG-CACCCCGGTGGACATT----ATTTTG-------------
NC_000913.3:418 --GCCTTACGATGAAAACGG-TACGCCGGTAGACATC----GTACTG-------------
################## ################
4030 4040 4050 4060 4070 4080
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 AGAAACCAAAGGCAAACGTCGTCTGGTGATTACGCCGGTT-GATGGTAGCGATCCGTACG
NC_000962.3:759 -AACACCCACGGCGTGCCGCGACGGATGA--ACATCGGCCAGATTTTGGAGACCCACCTG
NC_000913.3:418 -AACCCGCTGGGCGTACCGTCTCGTATGA--ACATCGGTCAGATCCTCGAAACCCACCTG
########################### ###################
4090 4100 4110 4120 4130 4140
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 AAGAGATGATTCCGAAATGGCGTC----AGCTCAACG-----------------------
NC_000962.3:759 GGTTGGTGTGCCC---ACAGCGGCTGGAAGGTCGACGCCG--------------------
NC_000913.3:418 GGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAA
#############
4150 4160 4170 4180 4190 4200
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 -------------------TGTTCGAAGGGGAACGTGTAGAACGTGGTGATGT-------
NC_000962.3:759 -----------------------CCAAGGGGGTTCCGGACTGGGCCGCCAGGC-------
NC_000913.3:418 GTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAG
#############################
4210 4220 4230 4240 4250 4260
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 ---GATTTCCGACGGTCCGGAAGCGCCGCACGATATTCTGCGTCTGCGTGGTGTTCATGC
NC_000962.3:759 -----TGCCCGACGAA---------------------------CTGCTCGAG--------
NC_000913.3:418 AAAGTTGACCTGAGTACCTTCAGCGATG-AAGAAGTTATGCGTCTGGCTGAA----AACC
4270 4280 4290 4300 4310 4320
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 TGTGACGCGTTACATCGTTAACGAAGTCCAGGATGTATACCGTCTGCAGGGCGTTAAGAT
NC_000962.3:759 -GCGCAGCCGAACGCCATTGTGTCGACGCCGGTGTTCGACGGCGCCCAGGAGGCCGAGCT
NC_000913.3:418 TGCGCAAAGGTATGCCA--ATCGCAACGCCGGTGTTCGACGGTGCGAAAGAAGCAGAAAT
################ #########################################
4330 4340 4350 4360 4370 4380
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 TAACGATAAACACATCGAAGTTATCGTTCGTCAGATGCTGC-GTAAAGCGACCATCGAA-
NC_000962.3:759 GCA----GGGCCTGTTGTCGTGCACGCTGCCCAACCGCGACGGTGACGTGCTGGTCGAC-
NC_000913.3:418 TAA----AGA--------------------------GCTGCTGAAACTTGGCGACCTGCC
### #################
4390 4400 4410 4420 4430 4440
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 -AGCGCCGGT-AGTTCCGACTTCCTGGAAGGCGAACAGGTTGAATATTCCCGCGTCAAG-
NC_000962.3:759 -GCCGACGGCAAGGCCATGCTCTTCGACGGGCGCAGCGGCGAGCCGTTCCCGTACCCGGT
NC_000913.3:418 GACTTCCGGTCAGATCCGCCTGTACGATGGTCGCACTGGTGAACAGTTCGAGCGTCCGGT
################################################
4450 4460 4470 4480 4490 4500
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 -ATCGCTAACCGCGAG------CTGGAAGCGAACGGCAAAGTGGG-GGCTACCTTCTCCC
NC_000962.3:759 CACGGTTGGCTACATGTACATCATGAAGCTGCACCACCTGGTGGACGACAAGATCCACGC
NC_000913.3:418 AACCGTTGGTTACATGTACATGCTGAAACTGAACCACCTGGTCGACGACAAGATGCACGC
############### ####################### ##############
4510 4520 4530 4540 4550 4560
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 GCGATCTGCTGGGT-----------ATCACCAAAGCGTCTCTGGCAACCGAATCGTTCAT
NC_000962.3:759 CCGCTCCACCGGGCCGTACTCGATGATCACCCAGCAGCCGCTGG--GCGGTAAGGCGCAG
NC_000913.3:418 GCGTTCCACCGGTTCTTACAGCCTGGTTACTCAGCAGCCGCTGG--GTGGTAAGGCACAG
############ ################## ##############
4570 4580 4590 4600 4610 4620
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 CTCTGCCG-CATCGTTCCAGGAGACCACGCGTGTCCTGACCGAAG--CAGCCGTTGCGGG
NC_000962.3:759 TTCGGTGGCCAGCGGTTCGGGGA--------------GATGGAGTGCTGGGCCATGCAGG
NC_000913.3:418 TTCGGTGGTCAGCGTTTCGGGGA--------------GATGGAAGTGTGGGCGCTGGAAG
######## ############ #############
4630 4640 4650 4660 4670 4680
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 TAAACGCGACGAACTGCGCGGCCTGAAAGAGAACGTTATCGTGGGGCGTCTGAT--CCCG
NC_000962.3:759 CCTACGGTGCTGCCTACAC--CCTGCAGGAGCTGTTGACCATCAA--GTCCGATGACACC
NC_000913.3:418 CATACGGCGCAGCATACAC--CCTGCAGGAAATGCTCACCGTTAA--GTCTGATGACGTG
################### ######################## ####
4690 4700 4710 4720 4730 4740
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 GCGGGTACCGGTTATGCGTACCACCAGGATCGTATGCGCCG---TCGCGCCGCGGGCGAG
NC_000962.3:759 GTCGGCCGCGTCAAGGTGTACGA-GGCGATCGTCAAGGGTGAGAACATCCCGGAGCCGGG
NC_000913.3:418 AACGGTCGTACCAAGATGTATAA-AAACATCGTGGACGGCAACCATCAGATGGAGCCGGG
####################### ################ ################
4750 4760 4770 4780 4790 4800
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 CAGCCAGCAACACCGCAGGTCACTGCGGA---AGATGCATCTGC-------AAGCCTGGC
NC_000962.3:759 CATCCCCGAGTCGTTCAAGGTGCTGCTCAAAGAACTGCAGTCGCTGTGCCTCAACGTCGA
NC_000913.3:418 CATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGGGTATCAACATCGA
############################# ############
4810 4820 4830 4840 4850 4860
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 AGAACTGCTGAACGCAGGT------------CTGGGCGGTTCTGATAACGA---------
NC_000962.3:759 GGTGCTATCGAGTGACGGTGCGGCGATCGAACTGCGCGAAGGTGAGGACGAGGACCTGGA
NC_000913.3:418 A------------------------------CTG---------GAAGACGA---------
4870 4880 4890 4900 4910 4920
=========+=========+=========+=========+=========+=========+
NC_003197.2:437 ------------------------------------------------------------
NC_000962.3:759 GCGGGCCGCGGCCAACCTGGGAATCAATCTGTCCCGCAACGAATCCGCAAGTGTCGAGGA
NC_000913.3:418 ------------------------------------------------------------
4930
=========+
NC_003197.2:437 ------GTAA
NC_000962.3:759 TCTTGCGTAA
NC_000913.3:418 ------GTAA
Parameters used Minimum Number Of Sequences For A Conserved Position: 2 Minimum Number Of Sequences For A Flanking Position: 3 Maximum Number Of Contiguous Nonconserved Positions: 8 Minimum Length Of A Block: 10 Allowed Gap Positions: None
Flank positions of the 106 selected block(s) Flanks: [32 46] [78 89] [113 135] [159 168] [171 181] [236 285] [312 329] [333 350] [382 391] [461 484] [494 504] [524 546] [548 562] [564 575] [577 586] [612 686] [703 715] [724 737] [748 788] [845 855] [946 958] [1085 1099] [1235 1296] [1299 1316] [1328 1343] [1397 1421] [1477 1505] [1539 1548] [1571 1587] [1595 1611] [1613 1627] [1642 1671] [1688 1717] [1721 1735] [1761 1809] [1812 1822] [1855 1875] [1893 1904] [1929 1993] [2011 2022] [2026 2036] [2039 2071] [2080 2093] [2113 2123] [2130 2183] [2211 2231] [2279 2301] [2305 2321] [2337 2348] [2366 2384] [2406 2435] [2444 2456] [2473 2484] [2514 2524] [2531 2561] [2565 2577] [2584 2597] [2609 2619] [2638 2664] [2690 2707] [2711 2743] [2792 2808] [2811 2872] [2875 2908] [2934 2944] [2950 2980] [2985 3009] [3027 3065] [3093 3147] [3150 3161] [3190 3212] [3219 3233] [3240 3252] [3276 3290] [3296 3316] [3319 3351] [3354 3378] [3381 3423] [3427 3444] [3451 3464] [3468 3491] [3509 3518] [3733 3751] [3872 3893] [3907 3951] [3963 3980] [3982 3997] [4023 4049] [4062 4093] [4164 4192] [4262 4277] [4280 4323] [4363 4379] [4392 4439] [4442 4456] [4463 4485] [4487 4512] [4527 4544] [4547 4568] [4570 4581] [4608 4639] [4642 4665] [4677 4703] [4706 4721] [4725 4769] [4773 4784] New number of positions in input.fasta-gb: 2471 (50% of the original 4930 positions)