Processed file: input.fasta
Number of sequences: 10
Alignment assumed to be: DNA
New number of positions: 462 (selected positions are underlined in blue)
10 20 30 40 50 60
=========+=========+=========+=========+=========+=========+
Olive_baboon_Pa ----------------------------------------CACAGACTCAGAAAGAA---
Western_lowland ---------CACTCGCGGCCCGGCACTCTTCTGGTCCC--CACAGACTCAGAAAGAA---
human_Homo_sapi ------------------------ACTCTTCTGGTCCC--CACAGACTCAGAGAGAA---
dog_Canis_lupus GCCTCCACGGCCTCCCCGCCCCGTGCATTTCTGGTTCTC-CTCAGACTCAGAAAGAA---
Sea_otter_Enhyd -----------------------------TCTGGTCCTCACACAGACTCAGAAAGAA---
Domestic_cat_Fe -----------------GCCCCGCAC-CTTCTGGTCCCGACACAGACTCAGAGAGAA---
Striped_hyena ---TCCGCGCGCTCGCGGCCCCGCACATTTCTGGTCCCGACACAGACTCAGAAAGAA---
Gerbil_Meriones -------CTTGCTACAGGCCCAACACACTTCTGATTCT--CACAGACTCAGGAAGAAAGA
Mouse_Mus_muscu -----------------------GACACTTCTGATTCT--GACAGACTCAGGAAGAA---
Brown_rat_Rattu ------------------------ACA-TTCTCCTTCT--TATAGACTCAGGAAGCA---
################
70 80 90 100 110 120
=========+=========+=========+=========+=========+=========+
Olive_baboon_Pa -CCCACCATGGTGCTGTCTCCTGACGACAAGAAACACGTCAAGGCCGCCTGGGGTAAGGT
Western_lowland -CCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCAAGGCCGCCTGGGGTAAGGT
human_Homo_sapi -CCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCAAGGCCGCCTGGGGTAAGGT
dog_Canis_lupus -CCCACCATGGTGCTGTCTCCCGCCGACAAGACCAACATCAAGTCCACTTGGGATAAGAT
Sea_otter_Enhyd -CCCACCATGGTGCTGTCTCCCGCCGACAAGACCAACGTCAAGTCCACCTGGGACAAGAT
Domestic_cat_Fe -CCAACCATGGTGCTGTCTGCCGCCGACAAGAGCAACGTCAAGGCCTGCTGGGGTAAGAT
Striped_hyena -CCAACCATGGTGCTGTCTTCCGCCGACAAGGCCAACATCAAGGCCACCTGGGATAAGAT
Gerbil_Meriones GATCATCATGGTGCTCTCCCCTGACGACAAGACCAACATCAAGACCGCCTGGGGCAAGAT
Mouse_Mus_muscu ----ACCATGGTGCTCTCTGGGGAAGACAAAAGCAACATCAAGGCTGCCTGGGGGAAGAT
Brown_rat_Rattu ----ATCATGGTGCTCTCTGCAGATGACAAAACCAACATCAAGAACTGCTGGGGGAAGAT
########################################################
130 140 150 160 170 180
=========+=========+=========+=========+=========+=========+
Olive_baboon_Pa CGGCGAGCACGCTGGCGAGTATGGTGCGGAGGCCCTGGAGAGGATGTTCCTGTCCTTCCC
Western_lowland CGGCGCGCACGCTGGCGACTATGGTGCGGAGGCCCTGGAGAGGATGTTCCTGTCCTTCCC
human_Homo_sapi CGGCGCGCACGCTGGCGAGTATGGTGCGGAGGCCCTGGAGAGGATGTTCCTGTCCTTCCC
dog_Canis_lupus TGGTGGCCACGCTGGCGACTACGGCGGAGAGGCGCTGGACAGGACCTTCCAGTCCTTCCC
Sea_otter_Enhyd TGGCGGCCACGCGGGCGAGTATGGCGGAGAAGCTCTGGAGAGGACCTTCGCGTCCTTCCC
Domestic_cat_Fe TGGGTCCCATGCTGGCGAATATGGCGCAGAGGCCCTGGAGAGGACCTTCTGCTCCTTCCC
Striped_hyena TGGGGGCCATGGTGGCGAGTACGGCGCAGAGGCCCTGGAGAGGACCTTCTTGTGCTTCCC
Gerbil_Meriones TGGCGGCCATGGTGCTGAGTATGGTGCGGAGGCCCTAGAGAGGATGTTCGTTAGCTTCCC
Mouse_Mus_muscu TGGTGGCCATGGTGCTGAATATGGAGCTGAAGCCCTGGAAAGGATGTTTGCTAGCTTCCC
Brown_rat_Rattu TGGTGGCCATGGTGGTGAATATGGCGAGGAGGCCCTACAGAGGATGTTCGCTGCCTTCCC
############################################################
190 200 210 220 230 240
=========+=========+=========+=========+=========+=========+
Olive_baboon_Pa CACCACCAAGACCTACTTCCCCCACTTCGACCTGAGCCACGGCTCTGACCAGGTTAACAA
Western_lowland CACCACCAAGACCTACTTCCCGCACTTCGACCTGAGCCACGGCTCTGCCCAGGTGAAGGG
human_Homo_sapi CACCACCAAGACCTACTTCCCGCACTTCGACCTGAGCCACGGCTCTGCCCAGGTTAAGGG
dog_Canis_lupus CACCACCAAGACCTACTTCCCGCACTTCGACCTGAGCCCCGGCTCCGCCCAGGTCAAGGC
Sea_otter_Enhyd CACCACCAAGACCTACTTCCCCCACTTCGACCTGAGCCACGGCTCCGCCCAGGTCAAGGC
Domestic_cat_Fe CACCACCAAGACCTACTTCCCCCACTTCGACCTGAGCCACGGCTCCGCCCAGGTCAAGGC
Striped_hyena CACCACCAAGACCTACTTCCCCCACTTCGACCTGAGCCACGGCTCCGCCCAGGTCAAGGC
Gerbil_Meriones CACCACCAAGACCTACTTCCCTCACTTTGATGTAAGCCACGGCTCCGCCCAGGTCAAGGC
Mouse_Mus_muscu CACCACCAAGACCTACTTCCCTCACTTTGATGTAAGCCACGGCTCTGCCCAGGTCAAGGG
Brown_rat_Rattu CACCACCAAGACCTACTTCTCTCACATTGATGTAAGCCCCGGCTCTGCCCAGGTCAAGGC
############################################################
250 260 270 280 290 300
=========+=========+=========+=========+=========+=========+
Olive_baboon_Pa ACACGGCAAGAAGGTGGCCGACGCGCTGACCCTCGCCGTGGGGCACGTGGACGACATGCC
Western_lowland CCACGGCAAGAAGGTGGCCGACGCGCTGACCAACGCCGTGGCGCACGTGGATGACATGCC
human_Homo_sapi CCACGGCAAGAAGGTGGCCGACGCGCTGACCAACGCCGTGGCGCACGTGGACGACATGCC
dog_Canis_lupus CCACGGCAAGAAGGTGGCTGATGCGCTGACCACTGCCGTGGCCCACCTGGACGACCTGCC
Sea_otter_Enhyd CCACGGCAAGAAGGTGGCCGACGCGCTGACCAACGCCGTGGCCCACATTGACGACCTGCC
Domestic_cat_Fe CCACGGCCAGAAGGTGGCCGATGCGCTGACGCAGGCCGTGGCCCACATGGACGACCTGCC
Striped_hyena GCACGGCAAGAAGGTGGCGGACGCCCTGGCCCTCGCCGCGGCGCACCTGGACGACCTGCC
Gerbil_Meriones CCATGGCAAGAAGGTCGCTGACGCGCTGGCCACCGCCGCAAGCCACCTCGATGACCTGCC
Mouse_Mus_muscu TCACGGCAAGAAGGTCGCCGATGCTCTGGCCAATGCTGCAGGCCACCTCGATGACCTGCC
Brown_rat_Rattu TCACGGCAAGAAGGTTGCTGATGCCTTGGCCAAAGCTGCAGACCACGTCGAAGACCTGCC
############################################################
310 320 330 340 350 360
=========+=========+=========+=========+=========+=========+
Olive_baboon_Pa CCAGGCGCTGTCCAAGCTGAGCGACCTGCACGCGCACAAGCTTCGGGTGGACCCGGTCAA
Western_lowland CAACGCGCTGTCCGCCCTGAGCGACCTGCACGCGCACAAGCTTCGGGTGGACCCGGTCAA
human_Homo_sapi CAACGCGCTGTCCGCCCTGAGCGACCTGCACGCGCACAAGCTTCGGGTGGACCCGGTCAA
dog_Canis_lupus CGGTGCCCTGTCCGCCCTCAGCGACCTGCACGCCTACAAGCTGCGCGTGGACCCCGTCAA
Sea_otter_Enhyd GGGAGCCATGTCCGCTCTGAGCGACCTGCACGCCTACAAGCTGCGTGTGGACCCCGTCAA
Domestic_cat_Fe TACCGCCATGTCGGCTCTGAGCGACCTGCACGCGTACAAGCTGCGTGTGGACCCCGTCAA
Striped_hyena CGCCGCCCTGTCGGCGCTGAGCGACCTGCACGCGTACAAGCTGCGTGTGGACCCCGTCAA
Gerbil_Meriones CGGTGCCCTGTCCTCTCTGAGTGACCTGCACGCCCACAAGCTGCGTGTGGACCCCGTCAA
Mouse_Mus_muscu CGGTGCCCTGTCTGCTCTGAGCGACCTGCATGCCCACAAGCTGCGTGTGGATCCCGTCAA
Brown_rat_Rattu TGGTGCCCTGTCCACTCTGAGCGACCTGCATGCCCACAAACTGCGTGTGGATCCTGTCAA
############################################################
370 380 390 400 410 420
=========+=========+=========+=========+=========+=========+
Olive_baboon_Pa CTTCAAGCTCCTGAGCCACTGCCTGCTGGTGACTCTGGCCGCTCACCTCCCCGCCGAGTT
Western_lowland CTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCGCCCACCTCCCCGCCGAGTT
human_Homo_sapi CTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCGCCCACCTCCCCGCCGAGTT
dog_Canis_lupus CTTCAAGCTCCTGAGCCACTGCCTGCTGGTGACCCTGGCCTGCCACCACCCCACCGAATT
Sea_otter_Enhyd CTTCAAGTTCCTGAGCCACTGCCTGCTGGTGACCCTGGCCTGCCACCACCCCGCGGAATT
Domestic_cat_Fe CTTCAAGTTCCTGAGCCACTGCCTGCTGGTGACCCTGGCCTGCCACCACCCCGCGGAATT
Striped_hyena CTTCAAGCTCCTGAGCCACTGCCTGCTGGTGACCCTGGCCGCCCACCACCCCGCGGAATT
Gerbil_Meriones CTTCAAGTTCCTGAGCCACTGCCTGCTGGTGACCCTGGCCGGCCACCACCCTGCTGACTT
Mouse_Mus_muscu CTTCAAGCTCCTGAGCCACTGCCTGCTGGTGACCTTGGCTAGCCACCACCCTGCCGATTT
Brown_rat_Rattu CTTCAAGTTCCTGAGCCACTGCCTGCTGGTGACCTTGGCTTGCCACCACCCTGGAGATTT
############################################################
430 440 450 460 470 480
=========+=========+=========+=========+=========+=========+
Olive_baboon_Pa CACCCCTGCGGTGCACGCCTCCCTGGACAAGTTCCTGGCTTCTGTGAGCACCGTGCTGAC
Western_lowland CACCCCTGCGGTGCACGCCTCCCTGGACAAGTTCCTGGCTTCTGTGAGCACCGTGCTGAC
human_Homo_sapi CACCCCTGCGGTGCACGCCTCCCTGGACAAGTTCCTGGCTTCTGTGAGCACCGTGCTGAC
dog_Canis_lupus CACCCCTGCTGTCCACGCCTCCCTGGACAAGTTCTTCACCGCTGTGAGCACCGTGCTGAC
Sea_otter_Enhyd CACCCCCGCCGTCCACGCCTCCCTGGACAAGTTCTTCAGCGCCGTGAGCACCGTGCTGAC
Domestic_cat_Fe CACCCCCGCCGTCCACGCCTCCCTGGACAAGTTCTTCAGCGCTGTGAGCACCGTGCTGAC
Striped_hyena CACTCCTGCCGTCCATGCCTCCCTGGACAAGTTCTTCAGCTCCGTGAGCACCGTGCTGAC
Gerbil_Meriones CACCCCCGCGATGCACGCCTCTCTGGACAAATTCCTTGCCTCCGTGAGCACCGTGCTGAC
Mouse_Mus_muscu CACCCCCGCGGTGCATGCCTCTCTGGACAAATTCCTTGCCTCTGTGAGCACCGTGCTGAC
Brown_rat_Rattu CACACCCGCCATGCACGCCTCTCTGGACAAATTCCTTGCCTCTGTGAGCACTGTGCTGAC
############################################################
490 500 510 520 530 540
=========+=========+=========+=========+=========+=========+
Olive_baboon_Pa CTCCAAATACCGTTAAGCTGGAGCCTCGGTGGCCATGCTTCTTGCCCCTTGGGCCTCCC-
Western_lowland CTCCAAATACCGTTAAGCTGGAGACTCGCTGGCCGTTCCTCCTGCCCGCTGGGCCTCCC-
human_Homo_sapi CTCCAAATACCGTTAAGCTGGAGCCTCGGTGGCCATGCTTCTTGCCCCTTGGGCCTCCC-
dog_Canis_lupus CTCCAAGTACCGTTAAGCTGCAGCCGCGGAGGCGGGAGCCCCTGCCC--TGGGCC-----
Sea_otter_Enhyd CTCCAAATACCGTTAAGCTGAAGCGGCGGCGGTGCT-------------CGGGCTCCCGG
Domestic_cat_Fe CTCCAAATACCGTTGAG-TGAAGCCGGGGCGAT----CGTCCTG-----AGGGC------
Striped_hyena CTCCAAATACCGTTGAA-GGAAGCCGTGGCGCC----CCTCCTG-----AGGGCC-----
Gerbil_Meriones CTCCAAGTACCGTTAAGCTGGAGTCTCTGGGCTG---CCTCCTGCCCGGCTGGCTTGCCC
Mouse_Mus_muscu CTCCAAGTACCGTTAAGCTG-----------------CCTTCTGC----GGGGCTTGCCT
Brown_rat_Rattu CTCCAAGTACCGTTAAGCCG-----------------CCTCCTGC----CGGGCTTGCCT
#################
550 560 570 580 590 600
=========+=========+=========+=========+=========+=========+
Olive_baboon_Pa ----GCCAGGCCCTCCTCCCCTTC-CTGCA-CCCGTACCCCC-TGGTCTTTGAAT-AAAG
Western_lowland ----AACGGGCCCTCCTCCCCTCC-TTGCA-CCGGCCCTTCC-TGGTCTTTGAAT-AAAG
human_Homo_sapi ----CCCAGCCCCTCCTCCCCTTC-CTGCA-CCCGTACCCCCGTGGTCTTTGAAT-AAAG
dog_Canis_lupus ----------GCCTCCTGCGCCCCATGGTGCCCTGCACTTCC-TGATGTTTGAAT-AAAG
Sea_otter_Enhyd T---CCGGGGCCCTCTTGCGCTCC-GCTCT-CCTCAACCTCC-CGATCTCTGAAT-AAAG
Domestic_cat_Fe -----CCGGGGCCTCTTGGGCTCC-GGGCA-CCCGAACTTCC-TGATCTTTGAAT-AAAG
Striped_hyena -----CGGGGCCCTCCTGTGACCC-GGGCG--CGGAACTTCC-TGATCTTTGAATAAAAG
Gerbil_Meriones TCCACCCGGGCCAGCCTCCCTCCC-TCGCA------------------------------
Mouse_Mus_muscu TCTGGCCATGCCCTTCTTCTCTCCCTTGCA-CCTGTACCTCT-TGGTCTTTGAAT-AAAG
Brown_rat_Rattu TCTGACCAGGCCCTTCTTCCCTCCCTTGCA-CCTATACCTCT-TGGTCTTTGAAT-AAAG
#############
610 620
=========+=========+=====
Olive_baboon_Pa TCTGAGTGGGCGGC-----------
Western_lowland TCTGAGTGGGCGGCA----------
human_Homo_sapi TCTGAGTGGGCGGCA----------
dog_Canis_lupus TCTGAGTGGGCTGCAGCCTC-----
Sea_otter_Enhyd TCTGAGTGGACTGCA----------
Domestic_cat_Fe TCTGAGTGGGCTGCA----------
Striped_hyena TCTGAGTGGGCTGCA----------
Gerbil_Meriones -------------------------
Mouse_Mus_muscu CCTGAGTAGGAAGAAAAAAAAAAAA
Brown_rat_Rattu CCTGAGTAGGAAGCA----------
Parameters used Minimum Number Of Sequences For A Conserved Position: 6 Minimum Number Of Sequences For A Flanking Position: 9 Maximum Number Of Contiguous Nonconserved Positions: 8 Minimum Length Of A Block: 10 Allowed Gap Positions: None
Flank positions of the 3 selected block(s) Flanks: [42 57] [65 497] [552 564] New number of positions in input.fasta-gb: 462 (73% of the original 625 positions)