Processed file: input.fasta
Number of sequences: 9
Alignment assumed to be: DNA
New number of positions: 261 (selected positions are underlined in blue)
10 20 30 40 50 60
=========+=========+=========+=========+=========+=========+
Califo_b A-----------------------------------------------------------
Hawaiian_monk_s A-----------------------------------------------------------
Elephant_seal A-----------------------------------AAAGAAACT---------------
Dog ATGTTCATTAACCGATGACTGTTCTCCACTAATCACAAGGATATTGGTACTTTATACTTA
Harbor_seal ATGTTCATAAATCGATGGTTATTTTCCACAAATCATAAGGATATCGGCACTCTTTATTTG
Northern_raccoo ATGTTCATAACCCGATGGCTATTTTCCACAAATCACAAGGATATTGGCACTCTCTACCTT
Califo_a ATGTTCATTAATCGATGGTTATTTTCTACTAATCATAAAGACATTGGCACCCTTTACCTC
Sea_otter ATGTTCATAAATCGATGATTATTCTCCACAAATCACAAAGACATCGGCACCCTTTACCTT
Northern_Americ ATGTTCGTAAATCGATGGTTATTCTCTACAAATCACAAAGATATTGGCACCTTGTACCTT
70 80 90 100 110 120
=========+=========+=========+=========+=========+=========+
Califo_b ------------------------------------------------------------
Hawaiian_monk_s ------------------------------------------------------------
Elephant_seal ------------------------------------------------------------
Dog CTATTTGGAGCATGAGCCGGTATAGTAGGCACTGCTTTGAGCCTCCTCATCCGAGCCGAA
Harbor_seal CTGTTTGGCGCATGAGCTGGAATAGTAGGCACCGCCCTCAGTCTCTTAATCCGCGCAGAA
Northern_raccoo CTATTCGGGGCTTGGGCTGGAATAGTGGGCACCGCTCTCAGCCTACTAATTCGTGCTGAG
Califo_a CTATTCGGTGCATGAGCCGGAATAGTAGGAACTGCCCTCAGTCTTCTAATCCGTGCTGAA
Sea_otter TTATTCGGTGCATGAGCCGGAATGGTAGGCACCGCTCTCAGCCTATTAATCCGTGCTGAA
Northern_Americ TTATTCGGTGCGTGAGCTGGAATGGTAGGAACTGCTCTTAGCCTACTAATCCGAGCCGAA
130 140 150 160 170 180
=========+=========+=========+=========+=========+=========+
Califo_b ------------------------------------------------------------
Hawaiian_monk_s ------------------------------------------------------------
Elephant_seal ------------------------------------------------------------
Dog CTAGGTCAGCCCGGTACTTTACTAGGTGACGATCAAATTTATAATGTCATCGTAACCGCC
Harbor_seal CTAGGACAACCTGGCGCCCTACTAGGAGATGACCAAATTTACAACGTAATTGTCACCGCC
Northern_raccoo TTAGGTCAACCGGGTACTTTATTAGGAGATGATCAGATTTACAATGTAATCGTAACTGCC
Califo_a TTAGGTCAACCCGGCGCCCTGCTAGGAGACGACCAGATTTATAATGTAATCGTAACCGCT
Sea_otter TTAGGTCAACCTGGCGCTCTATTAGGGGATGACCAGATTTATAATGTTATCGTCACCGCC
Northern_Americ TTAGGTCAACCTGGCGCTTTGCTAGGGGACGACCAGATTTATAATGTTATCGTCACCGCC
190 200 210 220 230 240
=========+=========+=========+=========+=========+=========+
Califo_b ------------------------------------------------------------
Hawaiian_monk_s ------------------------------------------------------------
Elephant_seal ------------------------------------------------------------
Dog CATGCTTTCGTAATAATCTTCTTCATAGTCATGCCCATCATAATTGGGGGCTTTGGAAAC
Harbor_seal CATGCATTCGTAATAATTTTCTTCATGGTAATGCCCATCATAATTGGCGGCTTTGGGAAC
Northern_raccoo CATGCTTTCGTAATAATCTTTTTCATAGTTATACCAATCATGATTGGAGGATTCGGTAAC
Califo_a CACGCATTTGTGATAATTTTCTTCATGGTAATACCTATTATACTTGGAGGTTTTGGTAAC
Sea_otter CACGCATTCGTGATAATTTTCTTTATAGTAATACCAATCATGATCGGTGGGTTTGGAAAC
Northern_Americ CACGCATTCGTAATGATTTTCTTCATGGTCATACCAATTATAATCGGGGGATTCGGAAAC
250 260 270 280 290 300
=========+=========+=========+=========+=========+=========+
Califo_b ------------------------------------------------------------
Hawaiian_monk_s ------------------------------------------------------------
Elephant_seal ------------------------------------------------------------
Dog TGACTAGTGCCGTTAATAATTGGTGCTCCGGACATGGCATTCCCCCGAATAAATAACATG
Harbor_seal TGACTGGTGCCCCTAATAATTGGAGCTCCTGATATAGCATTCCCCCGAATAAATAACATA
Northern_raccoo TGGCTAGTACCTCTTATAATTGGAGCACCTGACATAGCTTTCCCACGAATAAATAATATA
Califo_a TGACTCATCCCCTTAATAATTGGTGCACCTGATATAGCATTCCCACGAATAAATAACATA
Sea_otter TGACTAGTACCCCTAATAATTGGTGCGCCTGACATAGCATTTCCACGAATAAACAATATA
Northern_Americ TGGCTAGTGCCCCTTATAATTGGTGCACCCGACATGGCATTTCCCCGAATAAACAACATA
310 320 330 340 350 360
=========+=========+=========+=========+=========+=========+
Califo_b ------------------------------------------------------------
Hawaiian_monk_s ------------------------------------------------------------
Elephant_seal --------ATTCTTGCCCCACCCCGTCC--------------------------------
Dog AGCTTCTGACTCCTTCCTCCATCCTTTCTTCTACTATTAGCATCTTCTATGGTAGAAGCA
Harbor_seal AGTTTCTGACTTTTACCACCGTCCTTCCTACTACTACTGGCCTCCTCTATAGTAGAAGCA
Northern_raccoo AGCTTTTGACTTCTACCACCATCATTCCTACTATTACTAGCATCATCCATAGTAGAAGCA
Califo_a AGTTTCTGGCTTCTACCCCCTTCCTTCCTCCTCCTTCTGGCCTCTTCGATAGTAGAAGCA
Sea_otter AGCTTTTGACTCCTACCCCCCTCCTTTCTACTTCTTCTAGCCTCATCTATGGTAGAAGCG
Northern_Americ AGCTTTTGGCTTCTGCCTCCCTCATTCCTTCTTCTCTTGGCCTCATCCATGGTAGAATCG
370 380 390 400 410 420
=========+=========+=========+=========+=========+=========+
Califo_b ----------------------------------------------TGGTGCTCG-----
Hawaiian_monk_s ----------------------------------------------TGGCGCTCG-----
Elephant_seal -----GGGAGCAGCCGGGAGCTGCTTTCCTCCGCCCGCCGAGA---TGGCGCTCG-----
Dog GGTGCAGGAACGGGATGAACCGTATACCCCCCACTGGCTGGCAATCTGGCCCATGCAGGA
Harbor_seal GGTGCCGGAACCGGGTGAACCGTTTATCCTCCCCTAGCTGGGAACCTGGCTCATGCAGGA
Northern_raccoo GGAGCAGGAACCGGATGAACCGTATATCCTCCTTTAGCAGGTAACCTAGCACATGCAGGA
Califo_a GGTGTAGGAACAGGATGAACTGTTTACCCCCCTCTAGCAGGAAACCTGGCACACGCAGGA
Sea_otter GGTGCAGGAACAGGATGAACCGTATACCCCCCTTTAGCAGGTAATCTAGCACATGCAGGA
Northern_Americ GGTGCGGGAACAGGATGAACCGTATACCCCCCTTTAGCTGGGAATCTGGCACATGCAGGA
430 440 450 460 470 480
=========+=========+=========+=========+=========+=========+
Califo_b -------------------------------ACCCCGCAGG-------------------
Hawaiian_monk_s -------------------------------ACCCCGCAGG-------------------
Elephant_seal -------------------------------ACCCCGCAGG-------------------
Dog GCATCCGTTGACCTTACAATTTTCTCCTTACACTTAGCCGGAGTCTCTTCTATTTTAGGG
Harbor_seal GCCTCTGTAGATCTAACAATTTTCTCGCTCCACTTGGCAGGTGTATCATCTATTCTTGGA
Northern_raccoo GCATCCGTGGACCTCACCATCTTCTCCCTTCACCTTGCAGGCGTCTCGTCCATCTTAGGT
Califo_a GCATCCGTAGACCTAGCAATTTTTTCTCTACACTTAGCAGGTGTTTCATCCATTTTAGGG
Sea_otter GCATCGGTAGACCTGACAATTTTTTCTCTACACCTGGCAGGTGTATCGTCCATCCTAGGA
Northern_Americ GCATCAGTAGACCTGACAATTTTTTCCCTACACCTGGCAGGTGTTTCGTCCATCCTAGGG
##########
490 500 510 520 530 540
=========+=========+=========+=========+=========+=========+
Califo_b ------------------------------------------GCAGCATCTCAG------
Hawaiian_monk_s ------------------------------------------GCAGCATCTCAG------
Elephant_seal ------------------------------------------GCAGCATCTCAG------
Dog GCAATTAATTTCATCACTACTATTATCAACATAAAACCCCCTGCAATATCCCAGTATCAA
Harbor_seal GCTATCAACTTCATCACTACCATCATTAATATAAAACCCCCTGCAATGTCTCAATACCAA
Northern_raccoo GCCATCAACTTCATCACCACTATTATTAACATGAAACCCCCCGCTATATCCCAATACCAA
Califo_a TCTATCAACTTTATCACAACAATCATCAACATAAAACCGCCCGCTATATCACAATACCAA
Sea_otter GCTATCAATTTTATCACCACTATCATTAACATAAAACCCCCCGCAATATCACAATACCAA
Northern_Americ GCCATTAACTTCATTACCACTATTATTAACATAAAACCACCCGCAATGTCACAATACCAG
###########
550 560 570 580 590 600
=========+=========+=========+=========+=========+=========+
Califo_b ------------------------------------------------------------
Hawaiian_monk_s ------------------------------------------------------------
Elephant_seal ------------------------------------------------------------
Dog ACTCCCCTGTTTGTATGATCAGTACTAATTACAGCAGTTCTACTCTTACTATCCCTGCCT
Harbor_seal ACTCCACTGTTCGTATGATCCGTATTAATCACAGCGGTGCTCCTACTATTGTCACTACCA
Northern_raccoo ATCCCACTTTTTGTATGGTCAGTACTTATTACAGCAGTACTTCTCTTATTATCGCTGCCA
Califo_a ACTCCTTTATTCGTATGATCTGTTTTAATTACAGCTGTATTACTACTTCTATCCTTGCCA
Sea_otter ACTCCCTTATTCGTGTGATCTGTACTAATTACGGCCGTGCTTTTACTCCTATCTCTACCA
Northern_Americ ACCCCTCTATTTGTGTGATCTGTACTGATCACGGCTGTGCTCCTACTACTATCTCTGCCC
610 620 630 640 650 660
=========+=========+=========+=========+=========+=========+
Califo_b ------------------------------ACATGTCGAAA-------------------
Hawaiian_monk_s ------------------------------ACACGTCGGAA-------------------
Elephant_seal ------------------------------ACATGTCGAAA-------------------
Dog GTACTGGCTGCTGGAATTACAATACTTTTAACAGACCGGAATCTTAATACAACATTTTTT
Harbor_seal GTCCTGGCAGCTGGCATCACCATGCTACTCACAGACCGAAACCTGAATACAACATTCTTC
Northern_raccoo GTACTAGCAGCAGGCATCACCATATTACTCACCGACCGAAATCTGAACACAACCTTCTTT
Califo_a GTGCTAGCAGCCGGTATTACTATATTACTCACAGATCGTAATCTGAATACTACCTTCTTT
Sea_otter GTCTTAGCAGCCGGTATTACTATACTACTTACAGACCGGAATCTGAATACCACCTTTTTT
Northern_Americ GTACTAGCAGCTGGTATTACCATATTACTTACAGACCGAAATCTCAATACTACTTTCTTC
###########
670 680 690 700 710 720
=========+=========+=========+=========+=========+=========+
Califo_b -----------AGGA-------------------------TGTTTTGATTCGT-------
Hawaiian_monk_s -----------AGGA-------------------------TGTTTTGATTCCT-------
Elephant_seal -----------AGGA-------------------------TGTTTTGATTCCT-------
Dog GATCCCGCTGGAGGAGGAGACCCTATCCTATATCAACACCTATTCTGATTCTTCGGACAT
Harbor_seal GACCCTGCCGGAGGAGGTGATCCTATCCTGTATCAACATCTGTTCTGATTCTTCGGACAT
Northern_raccoo GACCCAGCAGGAGGAGGAGACCCAATCCTATACCAGCACCTATTCTGATTCTTTGGTCAC
Califo_a GATCCAGCCGGAGGAGGAGACCCTATCCTATATCAACACCTATTCTGATTTTTCGGACAT
Sea_otter GACCCAGCTGGAGGAGGAGACCCTATTCTATACCAACACTTATTCTGATTCTTCGGACAC
Northern_Americ GACCCCGCCGGAGGAGGAGACCCCATCCTGTACCAACACCTATTCTGATTCTTCGGGCAC
#############
730 740 750 760 770 780
=========+=========+=========+=========+=========+=========+
Califo_b ---------------------------------AAAATTTT-------------------
Hawaiian_monk_s ---------------------------------AAAATAAT-------------------
Elephant_seal ---------------------------------AAAATAAT-------------------
Dog CCTGAAGTTTACATTCTTATCCTGCCCGGATTCGGAATAATTTCTCACATTGTCACTTAC
Harbor_seal CCTGAGGTGTATATTCTAATCCTACCAGGATTCGGAATAATCTCACACATCGTTACCTAC
Northern_raccoo CCTGAAGTTTACATTCTAATTCTACCTGGGTTCGGAATAATTTCTCATATCGTAACATAT
Califo_a CCAGAAGTATACATCCTAATTCTCCCTGGGTTTGGTATTATTTCACACGTTGTAACATAC
Sea_otter CCAGAAGTATACATTCTAATTCTGCCTGGATTCGGAATTATCTCACACGTCGTTACATAC
Northern_Americ CCGGAGGTATACATCCTAATTCTACCAGGGTTTGGGATTATTTCACACGTCGTAACGTAT
790 800 810 820 830 840
=========+=========+=========+=========+=========+=========+
Califo_b -------GAGAGAAAAAGCCCA--------AGAGAGGTGTTCTGAACAA-----------
Hawaiian_monk_s -------GAGAGAAAAAGCCCG--------AGAGAGATGTTCTGAATGA-----------
Elephant_seal -------GAGAGAAAAAGCCCG--------AGAGAGATGTTCTGAATGA-----------
Dog TACTCAGGGAAAAAAGAGCCTTTCGGTTATATAGGAATAGTATGAGCAATAATATCTATT
Harbor_seal TATTCAGGAAAAAAAGAACCTTTTGGTTATATAGGAATAGTTTGAGCAATAATGTCCATC
Northern_raccoo TATTCGGGCAAAAAAGAACCGTTCGGTTACATAGGAATAGTCTGAGCAATAATATCCATT
Califo_a TACTCAGGAAAAAAAGAACCTTTTGGTTATATGGGAATAGTATGAGCTATAATGTCAATC
Sea_otter TACTCAGGAAAGAAAGAACCGTTTGGTTATATAGGAATGGTATGGGCAATAATATCAATT
Northern_Americ TATTCAGGAAAGAAAGAACCATTTGGTTACATAGGAATGGTCTGAGCAATAATATCAATT
############### ###################
850 860 870 880 890 900
=========+=========+=========+=========+=========+=========+
Califo_b ---GTTCAAGATTTT-------------ACCAAATGTT--------GCAAGGACT-----
Hawaiian_monk_s ---GTTCAAGATTTT-------------ACCAAATGTT--------GCAAGGACT-----
Elephant_seal ---GTTCAAGATTTT-------------ACCAAATGTT--------GCAAGGACT-----
Dog GGGTTTTTAGGCTTTATCGTATGAGCTCACCATATGTTTACCGTAGGAATAGATGTAGAC
Harbor_seal GGCTTCCTGGGCTTCATTGTATGAGCCCACCATATATTTACTGTAGGGATGGACGTCGAC
Northern_raccoo GGTTTCCTAGGATTTATTGTATGGGCCCACCATATGTTTACAGTAGGTATGGACGTAGAT
Califo_a GGTTTCTTAGGGTTTATCGTATGGGCCCACCATATGTTTACTGTAGGCTTAGACGTAGAC
Sea_otter GGCTTCCTAGGCTTTATTGTGTGAGCCCACCACATATTTACTGTAGGTATGGATGTCGAT
Northern_Americ GGTTTTCTGGGGTTTATCGTGTGAGCCCATCACATATTTACCGTAGGCATGGACGTCGAC
########### ##########
910 920 930 940 950 960
=========+=========+=========+=========+=========+=========+
Califo_b ----------------------------------CTGGAATCCTTATGGTAGTAAAG---
Hawaiian_monk_s ----------------------------------CTGGAATCCTTATGGTAGTAAAA---
Elephant_seal ----------------------------------CTGGAATCCTTATGGTAGTAAAA---
Dog ACACGAGCGTACTTTACGTCCGCCACTATAATTATCGCTATTCCAACGGGAGTAAAAGTA
Harbor_seal ACACGAGCATACTTCACTTCAGCCACTATAATTATTGCAATTCCAACGGGAGTTAAGGTA
Northern_raccoo ACACGAGCATACTTCACTTCAGCCACTATAATTATTGCTATTCCTACAGGAGTAAAAGTC
Califo_a ACACGAGCATATTTCACCTCAGCTACTATAATTATTGCTATTCCAACAGGTGTTAAAGTG
Sea_otter ACACGAGCATACTTTACATCAGCCACTATAATCATTGCTATCCCTACAGGGGTAAAAGTA
Northern_Americ ACACGAGCATATTTTACGTCAGCTACCATAATTATTGCAATCCCTACAGGAGTAAAAGTG
######################
970 980 990 1000 1010 1020
=========+=========+=========+=========+=========+=========+
Califo_b --TGCCGGAAAGAAAATTCTGCATTGAAAGAATGTCTAACTGCTC---------------
Hawaiian_monk_s --TGCCGGAAAGAAAATTCTGCGTTGAAAGAATGTCTAACTGCTC---------------
Elephant_seal --TGCTGGAAAGAAAATTCTGCATTGAAAGAATATCTAACTGCTC---------------
Dog TTTAGTTGACTGGCAACACTTCATGGAGGCAATAT-TAAATGATCTCCAGCTATGCTATG
Harbor_seal TTCAGCTGACTAGCTACCCTTCATGGGGGCAATAT-CAAATGGTCTCCAGCCATATTATG
Northern_raccoo TTTAGCTGACTGGCTACCTTACACGGGGGAAATAT-TAAATGATCACCCGCTATATTATG
Califo_a TTCAGCTGACTAGCTACTCTGCACGGAGGAAATAT-TAAATGATCTCCAGCTATACTATG
Sea_otter TTTAGCTGACTGGCTACTCTACACGGAGGAAATAT-TAAATGATCCCCAGCTATGCTATG
Northern_Americ TTTAGCTGACTGGCCACTCTGCACGGAGGAAATAT-TAAATGGTCGCCAGCTATACTATG
#################################
1030 1040 1050 1060 1070 1080
=========+=========+=========+=========+=========+=========+
Califo_b ----------------------------------------------ATTATAAT------
Hawaiian_monk_s ----------------------------------------------ATTATAAT------
Elephant_seal ----------------------------------------------ATTATAAT------
Dog AGCTTTAGGGTTTATTTTCTTATTTACAGTAGGCGGGTTAACAGGTATTGTCCTAGCTAA
Harbor_seal AGCCCTGGGCTTTATCTTCCTATTTACGGTAGGGGGCCTCACAGGTATCGTACTAGCCAA
Northern_raccoo AGCTCTGGGTTTCATTTTTCTATTTACAATTGGGGGTTTAACAGGAATTGTATTATCAAA
Califo_a GGCCTTAGGATTTATCTTTTTATTTACAGTGGGTGGTTTAACGGGTATTGTATTATCAAA
Sea_otter AGCTTTAGGGTTTATTTTTCTATTTACAGTGGGTGGTCTAACGGGTATCGTATTATCAAA
Northern_Americ GGCTCTAGGGTTTATTTTTCTATTCACGGTAGGCGGTCTGACGGGTATTGTATTATCAAA
1090 1100 1110 1120 1130 1140
=========+=========+=========+=========+=========+=========+
Califo_b ----------GATCCAGCCTTTTATGAAGAATGCAAAATGT-------------------
Hawaiian_monk_s ----------GATCCAGCCTTTTATGAAGAATGCAAAATGG-------------------
Elephant_seal ----------GATCCAGCCTTTTATGAAGAATGCAAAATGG-------------------
Dog TTCGTCCTTAGACATCGTTCTTCATGATACATATTATGTTGTGGCTCATTTTCACTATGT
Harbor_seal CTCATCACTAGACATTGTCCTTCATGACACATACTATGTGGTAGCACATTTCCATTATGT
Northern_raccoo TTCATCACTGGATATTGTTCTTCACGACACTTATTATGTAGTAGCACACTTTCACTATGT
Califo_a TTCATCACTAGACATTGTCCTTCATGATACATACTACGTAGTAGCTCACTTCCACTATGT
Sea_otter CTCATCACTGGATATTGTTCTTCACGACACATACTATGTAGTAGCACACTTTCATTACGT
Northern_Americ TTCGTCACTAGACATTGTCCTTCACGACACATATTATGTAGTAGCACATTTCCACTATGT
###############################
1150 1160 1170 1180 1190 1200
=========+=========+=========+=========+=========+=========+
Califo_b ------AATA--------------------------------------------------
Hawaiian_monk_s ------AATA--------------------------------------------------
Elephant_seal ------AATA--------------------------------------------------
Dog GCTTTCAATAGGAGCAGTTTTTGCCATTATGGGAGGATTTGCCCACTGATTCCCTTTATT
Harbor_seal TTTATCAATAGGAGCAGTATTCGCTATTATGGGTGGATTCGTCCATTGATTCCCCCTATT
Northern_raccoo GTTGTCAATAGGAGCGGTATTCGCTATCATGGGAGGGTTCACTCACTGATTCCCGTTATT
Califo_a TCTTTCAATAGGGGCAGTATTTGCAATTATGGGCGGATTCGTCCATTGATTCCCATTATT
Sea_otter TCTCTCAATGGGGGCAGTATTTGCAATTATGGGTGGATTTGTCCACTGATTCCCACTATT
Northern_Americ CCTTTCGATAGGGGCAGTGTTTGCAATTATAGGTGGATTCGTCCATTGGTTCCCCCTATT
1210 1220 1230 1240 1250 1260
=========+=========+=========+=========+=========+=========+
Califo_b ------------CCTGAAGGAAA----GGGAAGAATTCA---------------------
Hawaiian_monk_s ------------CCTGAAGGAAA----GGGAAGAATTCA---------------------
Elephant_seal ------------CCTGAAGGAAA----GGGAAGAATTCA---------------------
Dog CTCAGGTTATACTCTTAACGATACTTGAGCAAAGATTCACTTTACAATTATGTTTGTGGG
Harbor_seal CTCAGGCTATATACTCGACGACACTTGAGCAAAAATTCACTTCACAATCATATTCGTAGG
Northern_raccoo TTCAGGCTATACACTTAACGATGTTTGAGCAAAAATTCACTTCACAATCATGTTTGTAGG
Califo_a TACAGGCTATACCCTAAACGATATCTGAGCAAAAATTCATTTTACAATTATATTCGTAGG
Sea_otter CACGGGTTATATACTGAATGATACTTGAGCGAAAATCCACTTCACAATTATATTTGTCGG
Northern_Americ TACGGGCTACACTCTAAATGATATTTGAGCAAAAATCCACTTCACAATTATATTTGTAGG
########## ############
1270 1280 1290 1300 1310 1320
=========+=========+=========+=========+=========+=========+
Califo_b -GAAAAACTGGAATTCCTGCCAAGAAA---------------------------AGGCTA
Hawaiian_monk_s -GAAAAACTGGAATTCCTGCCAAGAAA---------------------------AGGCTA
Elephant_seal -GAAAAACTGGAATTCCTGCCAAGAAA---------------------------AGGCTA
Dog AGTAAATATAACTTTCTTCCCTCAACATTTCCTAGGTTTATCTGGAATACCTCGTCGATA
Harbor_seal AGTCAACATAACATTCTTTCCCCAACACTTCCTAGGTCTATCAGGAATACCTCGGCGATA
Northern_raccoo GGTTAACATGACATTTTTCCCCCAACACTTCCTAGGTCTATCAGGTATACCTCGACGATA
Califo_a AGTAAATACAACATTCTTTCCTCAACACTTCCTAGGATTATCAGGTATACCTCGACGCTA
Sea_otter AGTAAACATAACATTCTTTCCTCAACACTTCCTAGGCCTATCAGGTATGCCTCGACGTTA
Northern_Americ AGTAAACATGACATTCTTTCCTCAACATTTCCTAGGCCTATCCGGTATACCTCGACGCTA
########################## ####
1330 1340 1350 1360 1370 1380
=========+=========+=========+=========+=========+=========+
Califo_b CAGAATCTTCCCACAAGCATGTAG------------------------------------
Hawaiian_monk_s CAGAAACTTCCCACAAGCATGTAG------------------------------------
Elephant_seal CAGAAACTTCCCACAAGCATGTAG------------------------GCAATTACTCAG
Dog CTCTGACTACCCAGATGCATATACTACCTGAAATACCGTCTCCTCTATAGGATCGTTTAT
Harbor_seal CTCCGACTACCCAGACGCCTACACGACATGAAATACAGTCTCCTCCATGGGCTCATTCAT
Northern_raccoo CTCTGACTACCCAGATGCATACACTACATGAAATACAGTCTCTTCTGTGGGATCATTCAT
Califo_a TTCTGATTATCCAGATGCATATACAACATGAAACACAGTATCTTCCATGGGCTCATTCAT
Sea_otter CTCCGACTATCCAGATGCTTACACAACATGAAACACAGTATCTTCCATAGGCTCATTCAT
Northern_Americ TTCTGATTACCCAGATGCCTATACAACATGAAACGCGGTATCTTCCATAGGCTCATTCAT
#######################
1390 1400 1410 1420 1430 1440
=========+=========+=========+=========+=========+=========+
Califo_b ------------------------------------------------------------
Hawaiian_monk_s ------------------------------------------------------------
Elephant_seal ATACTTAGCTCCGATACTCGTGGAAATAATCATCACCTAAAAT-----------------
Dog CTCGCTTACAGCGGTGATGCTTATAATTTTTATGATCTGGGAAGCCTTTGCATCCAAACG
Harbor_seal TTCACTTACAGCAGTGATATTAATAGTATTCATAATCTGAGAAGCTTTCGCATCCAAGCG
Northern_raccoo CTCCCTAACAGCTGTAATACTAATGATTTTTATGGTATGAGAAGCCTTTGCTTCAAAACG
Califo_a TTCATTAACAGCAGTAATACTGATAATCTTCATAATTTGAGAAGCCTTCGCATCCAAACG
Sea_otter CTCACTAACAGCAGTAATATTAATGATCTTCATAATCTGAGAAGCCTTCGCATCCAAACG
Northern_Americ CTCACTGACAGCGGTAATGCTAATAATCTTCATAATCTGAGAGGCCTTCGCATCCAAACG
1450 1460 1470 1480 1490 1500
=========+=========+=========+=========+=========+=========+
Califo_b ------------------------------------------------------------
Hawaiian_monk_s ------------------------------------------------------------
Elephant_seal -AATGGACTCAAAGAAGTGTTTGCTTTATCCTAAATTATGGAAATAATAAAGATTTCCT-
Dog AGAAGTTGCTATAGTAGAACTTACTACAACTAACATTG-AGTGACTACATGGATGTCCCC
Harbor_seal AGAAGTAGCGGCAGTTGAATTAACTACAACTAATATCG-AATGACTGCATGGATGTCCCC
Northern_raccoo AGAAGTGATGATAGTGGAACTAACCTCAACGAATATCG-AATGGTTACATGGGTGTCCTC
Califo_a AGAAGTGTTGACAGTAGAGTTAACCTCAACAAACATCG-AATGATTACATGGATGTCCTC
Sea_otter AGAAGTACTAACAGTACAACTCACTTCAACAAACATTG-AATGGTTACACGGGTGTCCTC
Northern_Americ AGAGGTATTGACGGTGGAACTCACCTCAACAAACATTG-AATGATTACACGGATGCCCTC
1510 1520 1530 1540
=========+=========+=========+=========+=======
Califo_b -----------------------------------------------
Hawaiian_monk_s -----------------------------------------------
Elephant_seal -----------------------------------------------
Dog CTCCATACCACACGTTCGAAGAACCTACATATGTGATCCAAAAATAA
Harbor_seal CTCCTTACCACACATTTGAAGAGCCCACCTACGTCGTACTAAAATAA
Northern_raccoo CTCCATATCACACATTTGAAGAACCTACTTATGTGCTGCTAAAATAA
Califo_a CTCCATACCACACATTTGAAGAACCAACCTATGTGTTATCAAAGTAA
Sea_otter CACCATATCACACCTTTGAGGAGCCAACCTATGTACTATCGAAATAA
Northern_Americ CACCATATCACACCTTTGAAGAACCTACTTATGTAGTGTCAAAATAA
Parameters used Minimum Number Of Sequences For A Conserved Position: 5 Minimum Number Of Sequences For A Flanking Position: 8 Maximum Number Of Contiguous Nonconserved Positions: 8 Minimum Length Of A Block: 10 Allowed Gap Positions: None
Flank positions of the 15 selected block(s) Flanks: [452 461] [523 533] [631 641] [701 713] [788 802] [811 829] [845 855] [869 878] [936 957] [963 995] [1091 1121] [1214 1223] [1228 1239] [1262 1287] [1317 1343] New number of positions in input.fasta-gb: 261 (16% of the original 1547 positions)