Processed file: input.fasta
Number of sequences: 6
Alignment assumed to be: DNA
New number of positions: 369 (selected positions are underlined in blue)
10 20 30 40 50 60
=========+=========+=========+=========+=========+=========+
Equidae_Horse ---------------------------------ATTTATTATGTGCTGAATAGCTCTCCT
Suina_Pig TTGTTCAATGAAGAAAGATTCAGATCTATCCCAATTCATTACAGGCTGAATAGGATTCCT
Cervidae_Deer ------------------------------------------------------------
Bovidae_Cow ------------------------------------------------------------
Caprinae_Goat ------------------------------------------------------------
Caprinae_Sheep ------------------------------------------------------------
70 80 90 100 110 120
=========+=========+=========+=========+=========+=========+
Equidae_Horse CGTTATGAACCCATCTACTACCAACATAGACTAGCTGTACTAATTAATAATCAACATATG
Suina_Pig AGTTATGGATTTATTTTCTACCAACATAGATCAGCTGCATCAACTAATAACCAATTTATC
Cervidae_Deer -------------------------------CAGTTGCACTAATTAATAATCAATTTCTG
Bovidae_Cow -------------------------------CAGTTGCACTAATTAATAATCAATTTCTG
Caprinae_Goat -------------------------------CAGTTGCACTAATTAATAATCAATTTCTG
Caprinae_Sheep -------------------------------CAGTTGCACTAATTAATAATCAATTTCTG
#############################
130 140 150 160 170 180
=========+=========+=========+=========+=========+=========+
Equidae_Horse CCTTACCAATATTATGCAAGACCAGCTGCAGTTAGGCCACATGTCCAAATTCCTCAATGG
Suina_Pig CCTTACCCATTTTATGCAAGGCCAGTTGCAGTTAGGCCACATGCCCAAAAACCTCAATGG
Cervidae_Deer CCATACCCATATTATGCAAAGCCAGGTGCAGTTAGGTCACCTGCCCAAATTCTCCAATGG
Bovidae_Cow CCATACCCATATTATGCAAAGCCAGCTGCAGTTAGGTCACCTGCCCAAATTCTTCAATGG
Caprinae_Goat CCATACCCATATTATGCAAAGCCAGTTGCAGTTAGGTCACCTGCCCAAATTCTTCAGTGG
Caprinae_Sheep CCATACCCATATTATGCGAAGCCAGTTGCAGTTAGGTCACCTGCCCAAACTCTTCAATGG
############################################################
190 200 210 220 230 240
=========+=========+=========+=========+=========+=========+
Equidae_Horse CAAGTCCTGCCAAATAT------------------------CTACCCATCCACTGTGGTA
Suina_Pig CAAGACCAGCCAAATGT------------------------CTACCCACCTACTGGGGCA
Cervidae_Deer CAAGTCTTGCCAAATACCGTGCCCGCCAAGTCCTGCCAAGCCCAACCAACTACCCTGGCA
Bovidae_Cow CAAGTTTTGTCAAATACTGTGCCTGCCAAGTCCTGCCAAGCCCAGCCAACTACCATGGCA
Caprinae_Goat CAAGTTTTGCCAAATACTGCGCCTGCCAAGTCCTGCCAAGACCAGCCAACTACCATGGCA
Caprinae_Sheep CAAGTTTTGCCAAATACTGTGCCTGCCAAGTCCTGCCAAGACCAGCCAACTACCATGGCA
############################################################
250 260 270 280 290 300
=========+=========+=========+=========+=========+=========+
Equidae_Horse CGTCATCCACGCCCGCATCCATCATTTATTGCCATTCCTCCAAAGARACTTCAGGAGAAA
Suina_Pig CGTCGCCCACGCCCACATGCATCATTTATTGCCATCCCCCCAAAGAAAAATCAGGATACA
Cervidae_Deer CGTCACCCACACCCACGTTTATCATTTATGGCCATTCCGCCAAAGAAAAATCAGGATAAA
Bovidae_Cow CGTCACCCACACCCACATTTATCATTTATGGCCATTCCACCAAAGAAAAATCAGGATAAA
Caprinae_Goat CGTCACCCACACCCACATTTATCATTTATGGCCATTCCACCAAAGAAAGATCAGGATAAA
Caprinae_Sheep CATCACCCACACCCACATTTATCATTTATGGCCATTCCACCAAAGAAAGATCAGGATAAA
############################################################
310 320 330 340 350 360
=========+=========+=========+=========+=========+=========+
Equidae_Horse ACAGTCATCCCTAAGATCAATACTATTGCTACTGTTGAGCCTACACC------TATTCCT
Suina_Pig ACAGCCATCCCTGCCATTAATTCCATTGCTACTGTTGAGCCTACACT------TATACCT
Cervidae_Deer ACAGACATCCCTACCATCAACACCATTGCTACTGTTGAGTCTACAAT------TACACCT
Bovidae_Cow ACAGAAATCCCTACCATCAATACCATTGCTAGTGGTGAGCCTACAAG------TACACCT
Caprinae_Goat ACAGAAATCCCTACCATCAATACCATTGCTAGTGCTGAGCCTACAGTACACAGTACACCT
Caprinae_Sheep ACAGAAATCCCTGCCATCAATACCATTGCTAGTGTTGAGCCTACAGTACACAGTACACCT
############################################# #######
370 380 390 400 410 420
=========+=========+=========+=========+=========+=========+
Equidae_Horse ACCCCTGAACCAACAGTGAACAATGCAGTCATTCCAGACGCCTCCTCAGAATTCATCATC
Suina_Pig ACCACTGAACCAGTAGTGAACACTGTAGTAATTCCAGAAGCTGCCTCAGAATTCCTCATC
Cervidae_Deer ACCACCGAAGCAATAGTGGACACTGTAGCTACTCCAGAAGCTTCCTCAGAAG---TTATT
Bovidae_Cow ACCACCGAAGCAGTAGAGAGCACTGTAGCTACTCTAGAAGCTTCTCCAGAAG---TTATT
Caprinae_Goat ACCACCGAAGCAATAGTGAACACTGTAGATAATCCAGAAGCTTCCTCAGAAT---CTATT
Caprinae_Sheep ACCACTGAAGCAGTAGTGAACACGGTAGATAATCCAGAAGCTTCCTCAGAAT---CTATT
#################################################### #####
430 440 450 460 470
=========+=========+=========+=========+=========+=
Equidae_Horse GCCAGCACACCTGAGACTACCACAGTTCCAGTTACTTCACCTGTGGTCTAA
Suina_Pig ACAAACACACCTGAGACCACCGCAGTCCAAGTCTCTTCAACCGTGGTCTAA
Cervidae_Deer GAGAGTGCACCTGAGACCAAGACAGACCAAGTTACTTCAACCGTGGTCTAA
Bovidae_Cow GAGAGCCCACCTGAGATCAACACAGTCCAAGTTACTTCAACCGCGGTCTAA
Caprinae_Goat GTGAGTGCACCTGAGACCAACACAGCCCAAGTTACTTCAACCGAGGTCTAA
Caprinae_Sheep GCGAGTGCACCTGAGACCAACGCAGCCCAAGTTACTACAACCGAGGTCTAA
###################################################
Parameters used Minimum Number Of Sequences For A Conserved Position: 4 Minimum Number Of Sequences For A Flanking Position: 5 Maximum Number Of Contiguous Nonconserved Positions: 4 Minimum Length Of A Block: 5 Allowed Gap Positions: With Half
Flank positions of the 3 selected block(s) Flanks: [92 345] [354 412] [416 471] New number of positions in input.fasta-gb: 369 (78% of the original 471 positions)