Processed file: input.fasta
Number of sequences: 3
Alignment assumed to be: DNA
New number of positions: 289 (selected positions are underlined in blue)
10 20 30 40 50 60
=========+=========+=========+=========+=========+=========+
Cephalopods_cyc RCTTSBRNARTSVTC--HRCMYCYTCHRMCNDASSTBTNNTNC-GNARTNACDSMNTCHN
Tiger_shark_cyt --GACRDCTVNRVTCHRGCNSHCYTCHRMCNDASSTBTNNTNC-GNARTNACDSMNTCHN
Treron_Calvus_c -KTTRRNCAVTSVTCHRAMNHACYTCHRMCNDASSTBTNNTNCNGNARTNACDSMNTCHN
70 80 90 100 110 120
=========+=========+=========+=========+=========+=========+
Cephalopods_cyc DRNATTTGGTATTTGATCAGGTTTGTTAGGAACCTCCTTAAGTTTAATAATCCGAACAGA
Tiger_shark_cyt DRNA-TTGGTGCATGAGCAGGTATAGTTGGAACAGCTCTAAGTCTTCTAATTCGAGCTGA
Treron_Calvus_c DRNA-------------GAAGTTTA-----------------TATCCTAATCCTGCCAGG
##################
130 140 150 160 170 180
=========+=========+=========+=========+=========+=========+
Cephalopods_cyc ATTAGGACAACCTGGTTCCCTCCTTAATGATGATCAACTATATAATGTAATCGTCACAGC
Tiger_shark_cyt ACTCGGACAACCAGGATCACTCTTAGGGGACGATCAAATCTATAATGTAATCGTAACTGC
Treron_Calvus_c CTTTGG-------------------------GATCATCT--------------------C
######
190 200 210 220 230 240
=========+=========+=========+=========+=========+=========+
Cephalopods_cyc TCATGCATTCGTAATAATTTTCTTCCTTGTTATACCAGTCATAATTGGAGGATTTGGAAA
Tiger_shark_cyt CCATGCTTTCGTAATAATCTTTTTTATAGTTATACCAATCATAATTGGTGGCTTCGGAAA
Treron_Calvus_c CCA------CGTGGTAGCCTACTACGCAGGTAAAAAAGAACCCTTCGGCTACATGGGAAT
###################################################
250 260 270 280 290 300
=========+=========+=========+=========+=========+=========+
Cephalopods_cyc TTGATTAGTACCATTAATATTGGGTGCCCCTGATATAGCATTCCCTCGAATAAATAATAT
Tiger_shark_cyt TTGACTAGTTCCGTTAATAATTGGTGCACCAGATATAGCTTTCCCACGAATAAATAACAT
Treron_Calvus_c AGTATGAGCCATACTATCAATTGG---------------ATTCC---------------T
########################
310 320 330 340 350 360
=========+=========+=========+=========+=========+=========+
Cephalopods_cyc AAGCTTTTGACTTCTCCCCCCATCATTAACTCTCTTATTATCTTCTGCTGCAGTAGAAAG
Tiger_shark_cyt AAGCTTCTGACTTCTTCCACCATCATTTCTTCTTCTACTAGCCTCTGCTGGAGTAGAGGC
Treron_Calvus_c AGGCTTC-ATCGTTTGAGCCCACCACATATT-----------------TACAGTCGGCAT
####################### ############
370 380 390 400 410 420
=========+=========+=========+=========+=========+=========+
Cephalopods_cyc TGGTGTTGGAACTGGATGAACCGTTTACCCCCCTCTTTCAAGAAATTTAGCTCATATAGG
Tiger_shark_cyt TGGAGCAGGTACTGGTTGAACAGTTTATCCTCCATTAGCTAGTAACCTAGCTCATGCTGG
Treron_Calvus_c GGACGTAGACACCCG------AGCCTACTTTACTTCAGCTA----------CCATA----
############### ####################
430 440 450 460 470 480
=========+=========+=========+=========+=========+=========+
Cephalopods_cyc ACCATCTGTCGATTTAGCTATTTTTTCACTTCATCTAGCAGGTATTTCTTCAATTCTTGG
Tiger_shark_cyt ACCATCTGTTGATTTAGCAATTTTCTCTCTTCACTTAGCTGGTGTTTCATCAATTTTAGC
Treron_Calvus_c ATCATC----------GCCATT------------CCAACAGGCAT----TAAAGTTTTCA
###########
490 500 510 520 530 540
=========+=========+=========+=========+=========+=========+
Cephalopods_cyc AGCTATTAACTTTATCACA-------ACTATTATTAATATACGATGAGAAGGAATACTTA
Tiger_shark_cyt CTCAATTAACTTTATTACA-------ACTATCATTAATATAAAACCCCCAGCTATCTCCC
Treron_Calvus_c GCTGATTAGCTACGCTTCATGGAGGGACCATCA---------------------------
###################
550 560 570 580 590 600
=========+=========+=========+=========+=========+=========+
Cephalopods_cyc TAGAACGACTTCCACTATTTGTATGATCCGTCTTCATTACTGCTATTCTACTTCTCC--T
Tiger_shark_cyt AATATCAAACACCATTATTTGTATGATCTATTCTTGTTACTACTATTCTCCTTCTTC--T
Treron_Calvus_c ---AGTGAGACCCACCAATACTATGAGCC-------------TTAGGCTTCATCTTCCTT
######################### ############## #
610 620 630 640 650 660
=========+=========+=========+=========+=========+=========+
Cephalopods_cyc TTCATTACC--AGTTCTTGCTGGAGCAATTACTATACTCCTAACCGATCGAAATTTTAAT
Tiger_shark_cyt TTCACTTCC--AGTTCTTGCAGCAGGAATTACAATACTACTTACAGACCGTAACCTTAAT
Treron_Calvus_c TTCACTATCGGAGGTCT----------------------------AACCGGAATCGTTCT
######### ##############
670 680 690 700 710 720
=========+=========+=========+=========+=========+=========+
Cephalopods_cyc ACCACATTTTTTGATCCTAGAGGAGGAGGAGATCCCATTTTATATCAACATTTATTT---
Tiger_shark_cyt ACTACATTCTTTGATCCAGCGGGTGGAGGAGATCCAATCCTTTATCAGCACTTATTCTGA
Treron_Calvus_c AGCAAACTCCTCGCT--------------AGACATTGCCCTA------------------
############### ############
730
=========+=
Cephalopods_cyc -----------
Tiger_shark_cyt TTCTTCGGTCA
Treron_Calvus_c -----------
Parameters used Minimum Number Of Sequences For A Conserved Position: 2 Minimum Number Of Sequences For A Flanking Position: 3 Maximum Number Of Contiguous Nonconserved Positions: 8 Minimum Length Of A Block: 10 Allowed Gap Positions: None
Flank positions of the 11 selected block(s) Flanks: [103 126] [190 264] [309 331] [349 375] [382 401] [470 499] [544 568] [584 597] [600 609] [647 675] [690 701] New number of positions in input.fasta-gb: 289 (39% of the original 731 positions)