Processed file: input.fasta
Number of sequences: 11
Alignment assumed to be: DNA
New number of positions: 352 (selected positions are underlined in blue)
10 20 30 40 50 60
=========+=========+=========+=========+=========+=========+
Tarsier_Carlito ------------------------------------------------------------
Olive_baboon_Pa ----------------------------------------CACAGACTCAGAAAGAA---
Western_lowland ---------CACTCGCGGCCCGGCACTCTTCTGGTCCC--CACAGACTCAGAAAGAA---
human_Homo_sapi ------------------------ACTCTTCTGGTCCC--CACAGACTCAGAGAGAA---
dog_Canis_lupus GCCTCCACGGCCTCCCCGCCCCGTGCATTTCTGGTTCTC-CTCAGACTCAGAAAGAA---
Sea_otter_Enhyd -----------------------------TCTGGTCCTCACACAGACTCAGAAAGAA---
Domestic_cat_Fe -----------------GCCCCGCAC-CTTCTGGTCCCGACACAGACTCAGAGAGAA---
Striped_hyena ---TCCGCGCGCTCGCGGCCCCGCACATTTCTGGTCCCGACACAGACTCAGAAAGAA---
Gerbil_Meriones -------CTTGCTACAGGCCCAACACACTTCTGATTCT--CACAGACTCAGGAAGAAAGA
Mouse_Mus_muscu -----------------------GACACTTCTGATTCT--GACAGACTCAGGAAGAA---
Brown_rat_Rattu -------------------------ACATTCTCCTTCT--TATAGACTCAGGAAGCA---
70 80 90 100 110 120
=========+=========+=========+=========+=========+=========+
Tarsier_Carlito ------------------------------------------------------------
Olive_baboon_Pa -CCCACCATGGTGCTGTCTCCTGACGACAAGAAACACGTCAAGGCCGCCTGGGGTAAGGT
Western_lowland -CCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCAAGGCCGCCTGGGGTAAGGT
human_Homo_sapi -CCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCAAGGCCGCCTGGGGTAAGGT
dog_Canis_lupus -CCCACCATGGTGCTGTCTCCCGCCGACAAGACCAACATCAAGTCCACTTGGGATAAGAT
Sea_otter_Enhyd -CCCACCATGGTGCTGTCTCCCGCCGACAAGACCAACGTCAAGTCCACCTGGGACAAGAT
Domestic_cat_Fe -CCAACCATGGTGCTGTCTGCCGCCGACAAGAGCAACGTCAAGGCCTGCTGGGGTAAGAT
Striped_hyena -CCAACCATGGTGCTGTCTTCCGCCGACAAGGCCAACATCAAGGCCACCTGGGATAAGAT
Gerbil_Meriones GATCATCATGGTGCTCTCCCCTGACGACAAGACCAACATCAAGACCGCCTGGGGCAAGAT
Mouse_Mus_muscu ----ACCATGGTGCTCTCTGGGGAAGACAAAAGCAACATCAAGGCTGCCTGGGGGAAGAT
Brown_rat_Rattu ----ATCATGGTGCTCTCTGCAGATGACAAAACCAACATCAAGAACTGCTGGGGGAAGAT
130 140 150 160 170 180
=========+=========+=========+=========+=========+=========+
Tarsier_Carlito --------------------------------------GCAGGATGTTCCTGTCCTTCCC
Olive_baboon_Pa CGGCGAGCACGCTGGCGAGTATGGTGCGGAGGCCCTGGAGAGGATGTTCCTGTCCTTCCC
Western_lowland CGGCGCGCACGCTGGCGACTATGGTGCGGAGGCCCTGGAGAGGATGTTCCTGTCCTTCCC
human_Homo_sapi CGGCGCGCACGCTGGCGAGTATGGTGCGGAGGCCCTGGAGAGGATGTTCCTGTCCTTCCC
dog_Canis_lupus TGGTGGCCACGCTGGCGACTACGGCGGAGAGGCGCTGGACAGGACCTTCCAGTCCTTCCC
Sea_otter_Enhyd TGGCGGCCACGCGGGCGAGTATGGCGGAGAAGCTCTGGAGAGGACCTTCGCGTCCTTCCC
Domestic_cat_Fe TGGGTCCCATGCTGGCGAATATGGCGCAGAGGCCCTGGAGAGGACCTTCTGCTCCTTCCC
Striped_hyena TGGGGGCCATGGTGGCGAGTACGGCGCAGAGGCCCTGGAGAGGACCTTCTTGTGCTTCCC
Gerbil_Meriones TGGCGGCCATGGTGCTGAGTATGGTGCGGAGGCCCTAGAGAGGATGTTCGTTAGCTTCCC
Mouse_Mus_muscu TGGTGGCCATGGTGCTGAATATGGAGCTGAAGCCCTGGAAAGGATGTTTGCTAGCTTCCC
Brown_rat_Rattu TGGTGGCCATGGTGGTGAATATGGCGAGGAGGCCCTACAGAGGATGTTCGCTGCCTTCCC
######################
190 200 210 220 230 240
=========+=========+=========+=========+=========+=========+
Tarsier_Carlito CACCACCAAGACCTACTTCCCCCACTTCGACCTGAGCCACGGCTCCAGCCAGGTCAAAGG
Olive_baboon_Pa CACCACCAAGACCTACTTCCCCCACTTCGACCTGAGCCACGGCTCTGACCAGGTTAACAA
Western_lowland CACCACCAAGACCTACTTCCCGCACTTCGACCTGAGCCACGGCTCTGCCCAGGTGAAGGG
human_Homo_sapi CACCACCAAGACCTACTTCCCGCACTTCGACCTGAGCCACGGCTCTGCCCAGGTTAAGGG
dog_Canis_lupus CACCACCAAGACCTACTTCCCGCACTTCGACCTGAGCCCCGGCTCCGCCCAGGTCAAGGC
Sea_otter_Enhyd CACCACCAAGACCTACTTCCCCCACTTCGACCTGAGCCACGGCTCCGCCCAGGTCAAGGC
Domestic_cat_Fe CACCACCAAGACCTACTTCCCCCACTTCGACCTGAGCCACGGCTCCGCCCAGGTCAAGGC
Striped_hyena CACCACCAAGACCTACTTCCCCCACTTCGACCTGAGCCACGGCTCCGCCCAGGTCAAGGC
Gerbil_Meriones CACCACCAAGACCTACTTCCCTCACTTTGATGTAAGCCACGGCTCCGCCCAGGTCAAGGC
Mouse_Mus_muscu CACCACCAAGACCTACTTCCCTCACTTTGATGTAAGCCACGGCTCTGCCCAGGTCAAGGG
Brown_rat_Rattu CACCACCAAGACCTACTTCTCTCACATTGATGTAAGCCCCGGCTCTGCCCAGGTCAAGGC
############################################################
250 260 270 280 290 300
=========+=========+=========+=========+=========+=========+
Tarsier_Carlito CCACGGCAAGAAGGTGGCCGACGCGCTGACCACCGCCGTAGGGCACATGGACGACATGCC
Olive_baboon_Pa ACACGGCAAGAAGGTGGCCGACGCGCTGACCCTCGCCGTGGGGCACGTGGACGACATGCC
Western_lowland CCACGGCAAGAAGGTGGCCGACGCGCTGACCAACGCCGTGGCGCACGTGGATGACATGCC
human_Homo_sapi CCACGGCAAGAAGGTGGCCGACGCGCTGACCAACGCCGTGGCGCACGTGGACGACATGCC
dog_Canis_lupus CCACGGCAAGAAGGTGGCTGATGCGCTGACCACTGCCGTGGCCCACCTGGACGACCTGCC
Sea_otter_Enhyd CCACGGCAAGAAGGTGGCCGACGCGCTGACCAACGCCGTGGCCCACATTGACGACCTGCC
Domestic_cat_Fe CCACGGCCAGAAGGTGGCCGATGCGCTGACGCAGGCCGTGGCCCACATGGACGACCTGCC
Striped_hyena GCACGGCAAGAAGGTGGCGGACGCCCTGGCCCTCGCCGCGGCGCACCTGGACGACCTGCC
Gerbil_Meriones CCATGGCAAGAAGGTCGCTGACGCGCTGGCCACCGCCGCAAGCCACCTCGATGACCTGCC
Mouse_Mus_muscu TCACGGCAAGAAGGTCGCCGATGCTCTGGCCAATGCTGCAGGCCACCTCGATGACCTGCC
Brown_rat_Rattu TCACGGCAAGAAGGTTGCTGATGCCTTGGCCAAAGCTGCAGACCACGTCGAAGACCTGCC
############################################################
310 320 330 340 350 360
=========+=========+=========+=========+=========+=========+
Tarsier_Carlito CAACGCCCTGTCCGCTCTGAGTGACCTGCACGCGCACAAGCTGCGGGTGGACCCGGTCAA
Olive_baboon_Pa CCAGGCGCTGTCCAAGCTGAGCGACCTGCACGCGCACAAGCTTCGGGTGGACCCGGTCAA
Western_lowland CAACGCGCTGTCCGCCCTGAGCGACCTGCACGCGCACAAGCTTCGGGTGGACCCGGTCAA
human_Homo_sapi CAACGCGCTGTCCGCCCTGAGCGACCTGCACGCGCACAAGCTTCGGGTGGACCCGGTCAA
dog_Canis_lupus CGGTGCCCTGTCCGCCCTCAGCGACCTGCACGCCTACAAGCTGCGCGTGGACCCCGTCAA
Sea_otter_Enhyd GGGAGCCATGTCCGCTCTGAGCGACCTGCACGCCTACAAGCTGCGTGTGGACCCCGTCAA
Domestic_cat_Fe TACCGCCATGTCGGCTCTGAGCGACCTGCACGCGTACAAGCTGCGTGTGGACCCCGTCAA
Striped_hyena CGCCGCCCTGTCGGCGCTGAGCGACCTGCACGCGTACAAGCTGCGTGTGGACCCCGTCAA
Gerbil_Meriones CGGTGCCCTGTCCTCTCTGAGTGACCTGCACGCCCACAAGCTGCGTGTGGACCCCGTCAA
Mouse_Mus_muscu CGGTGCCCTGTCTGCTCTGAGCGACCTGCATGCCCACAAGCTGCGTGTGGATCCCGTCAA
Brown_rat_Rattu TGGTGCCCTGTCCACTCTGAGCGACCTGCATGCCCACAAACTGCGTGTGGATCCTGTCAA
############################################################
370 380 390 400 410 420
=========+=========+=========+=========+=========+=========+
Tarsier_Carlito CTTCAAGCTCCTGAGCCACTGCCTGCTGGTGACCCTGGCCTGCCACCACCCTGCGGACTT
Olive_baboon_Pa CTTCAAGCTCCTGAGCCACTGCCTGCTGGTGACTCTGGCCGCTCACCTCCCCGCCGAGTT
Western_lowland CTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCGCCCACCTCCCCGCCGAGTT
human_Homo_sapi CTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCGCCCACCTCCCCGCCGAGTT
dog_Canis_lupus CTTCAAGCTCCTGAGCCACTGCCTGCTGGTGACCCTGGCCTGCCACCACCCCACCGAATT
Sea_otter_Enhyd CTTCAAGTTCCTGAGCCACTGCCTGCTGGTGACCCTGGCCTGCCACCACCCCGCGGAATT
Domestic_cat_Fe CTTCAAGTTCCTGAGCCACTGCCTGCTGGTGACCCTGGCCTGCCACCACCCCGCGGAATT
Striped_hyena CTTCAAGCTCCTGAGCCACTGCCTGCTGGTGACCCTGGCCGCCCACCACCCCGCGGAATT
Gerbil_Meriones CTTCAAGTTCCTGAGCCACTGCCTGCTGGTGACCCTGGCCGGCCACCACCCTGCTGACTT
Mouse_Mus_muscu CTTCAAGCTCCTGAGCCACTGCCTGCTGGTGACCTTGGCTAGCCACCACCCTGCCGATTT
Brown_rat_Rattu CTTCAAGTTCCTGAGCCACTGCCTGCTGGTGACCTTGGCTTGCCACCACCCTGGAGATTT
############################################################
430 440 450 460 470 480
=========+=========+=========+=========+=========+=========+
Tarsier_Carlito CACCCCTGCCGTGCATGCCTCCCTGGACAAGTTCCTGGCCTCTGTGAGCACCGTGCTGAC
Olive_baboon_Pa CACCCCTGCGGTGCACGCCTCCCTGGACAAGTTCCTGGCTTCTGTGAGCACCGTGCTGAC
Western_lowland CACCCCTGCGGTGCACGCCTCCCTGGACAAGTTCCTGGCTTCTGTGAGCACCGTGCTGAC
human_Homo_sapi CACCCCTGCGGTGCACGCCTCCCTGGACAAGTTCCTGGCTTCTGTGAGCACCGTGCTGAC
dog_Canis_lupus CACCCCTGCTGTCCACGCCTCCCTGGACAAGTTCTTCACCGCTGTGAGCACCGTGCTGAC
Sea_otter_Enhyd CACCCCCGCCGTCCACGCCTCCCTGGACAAGTTCTTCAGCGCCGTGAGCACCGTGCTGAC
Domestic_cat_Fe CACCCCCGCCGTCCACGCCTCCCTGGACAAGTTCTTCAGCGCTGTGAGCACCGTGCTGAC
Striped_hyena CACTCCTGCCGTCCATGCCTCCCTGGACAAGTTCTTCAGCTCCGTGAGCACCGTGCTGAC
Gerbil_Meriones CACCCCCGCGATGCACGCCTCTCTGGACAAATTCCTTGCCTCCGTGAGCACCGTGCTGAC
Mouse_Mus_muscu CACCCCCGCGGTGCATGCCTCTCTGGACAAATTCCTTGCCTCTGTGAGCACCGTGCTGAC
Brown_rat_Rattu CACACCCGCCATGCACGCCTCTCTGGACAAATTCCTTGCCTCTGTGAGCACTGTGCTGAC
############################################################
490 500 510 520 530 540
=========+=========+=========+=========+=========+=========+
Tarsier_Carlito CTCCAAATACCGTTAAGCTGGAGCCCGGGTGG--------CCTCCCG-------------
Olive_baboon_Pa CTCCAAATACCGTTAAGCTGGAGCCTCGGTGGCCATG---CTTCTTGCCCCTTGGGCCTC
Western_lowland CTCCAAATACCGTTAAGCTGGAGACTCGCTGGCCGTT---CCTCCTGCCCGCTGGGCCTC
human_Homo_sapi CTCCAAATACCGTTAAGCTGGAGCCTCGGTGGCCATG---CTTCTTGCCCCTTGGGCCTC
dog_Canis_lupus CTCCAAGTACCGTTAAGCTGCAGCCGCGGAGGCGGGA---GCCCCTGCCC--TGGGCCG-
Sea_otter_Enhyd CTCCAAATACCGTTAAGCTGAAGCGGCGGCGGTGCTCGGGCTCCCGGTCCG---------
Domestic_cat_Fe CTCCAAATACCGTTGAG-TGAAGCCGGGGCGAT-------CGTCCTG-----AGGGCCC-
Striped_hyena CTCCAAATACCGTTGAA-GGAAGCCGTGGCGCC-------CCTCCTG-----AGGGCCCG
Gerbil_Meriones CTCCAAGTACCGTTAAGCTGGAGTCTCTGGGCTG------CCTCCTGCCCGGCTGGCTTG
Mouse_Mus_muscu CTCCAAGTACCGTTAAGCTG--------------------CCTTCTGC----GGGGCTTG
Brown_rat_Rattu CTCCAAGTACCGTTAAGCCG--------------------CCTCCTGC----CGGGCTTG
#################
550 560 570 580 590 600
=========+=========+=========+=========+=========+=========+
Tarsier_Carlito ----------GGGCCCTCCTCCCTTCC-CTGCA-CCCGCACCTTC-TGGTCTCTCAAT-A
Olive_baboon_Pa CC-----GCCAGGCCCTCCTCCCCTTC-CTGCA-CCCGTACCCCC-TGGTCTTTGAAT-A
Western_lowland CC-----AACGGGCCCTCCTCCCCTCC-TTGCA-CCGGCCCTTCC-TGGTCTTTGAAT-A
human_Homo_sapi CC-----CCCAGCCCCTCCTCCCCTTC-CTGCA-CCCGTACCCCCGTGGTCTTTGAAT-A
dog_Canis_lupus --------------CCTCCTGCGCCCCATGGTGCCCTGCACTTCC-TGATGTTTGAAT-A
Sea_otter_Enhyd ----------GGGCCCTCTTGCGCTCC-GCTCT-CCTCAACCTCC-CGATCTCTGAAT-A
Domestic_cat_Fe ----------GGGGCCTCTTGGGCTCC-GGGCA-CCCGAACTTCC-TGATCTTTGAAT-A
Striped_hyena ----------GGGCCCTCCTGTGACCC-GGGCG--CGGAACTTCC-TGATCTTTGAATAA
Gerbil_Meriones CCCTCCACCCGGGCCAGCCTCCCTCCC-TCGCA---------------------------
Mouse_Mus_muscu CCTTCTGGCCATGCCCTTCTTCTCTCCCTTGCA-CCTGTACCTCT-TGGTCTTTGAAT-A
Brown_rat_Rattu CCTTCTGACCAGGCCCTTCTTCCCTCCCTTGCA-CCTATACCTCT-TGGTCTTTGAAT-A
#############
610 620
=========+=========+========
Tarsier_Carlito AAGTCTGAGTGGGTGGCAA---------
Olive_baboon_Pa AAGTCTGAGTGGGCGGC-----------
Western_lowland AAGTCTGAGTGGGCGGCA----------
human_Homo_sapi AAGTCTGAGTGGGCGGCA----------
dog_Canis_lupus AAGTCTGAGTGGGCTGCAGCCTC-----
Sea_otter_Enhyd AAGTCTGAGTGGACTGCA----------
Domestic_cat_Fe AAGTCTGAGTGGGCTGCA----------
Striped_hyena AAGTCTGAGTGGGCTGCA----------
Gerbil_Meriones ----------------------------
Mouse_Mus_muscu AAGCCTGAGTAGGAAGAAAAAAAAAAAA
Brown_rat_Rattu AAGCCTGAGTAGGAAGCA----------
Parameters used Minimum Number Of Sequences For A Conserved Position: 6 Minimum Number Of Sequences For A Flanking Position: 9 Maximum Number Of Contiguous Nonconserved Positions: 8 Minimum Length Of A Block: 10 Allowed Gap Positions: None
Flank positions of the 2 selected block(s) Flanks: [159 497] [555 567] New number of positions in input.fasta-gb: 352 (56% of the original 628 positions)