oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo --- PhyML v3.0 --- A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood Stephane Guindon & Olivier Gascuel http://atgc.lirmm.fr/phyml Copyright CNRS - Universite Montpellier II oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Sequence file : phyml2cry4zWs/input.phy . Data set : #1 . Tree search : NNIs. Initial tree : BIONJ . Model of nucleotides substitution : HKY85 . Number of taxa : 3 . Log-likelihood : -8702.90466 . Discrete gamma model : Yes - Number of categories : 4 - Gamma shape parameter : 98.507 . Proportion of invariant : 0.000 . Transition/transversion ratio : 2.195 . Nucleotides frequencies : - f(A)= 0.21705 - f(C)= 0.27668 - f(G)= 0.30581 - f(T)= 0.20046 . Time used 0h0m0s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo