oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo --- PhyML v3.0 --- A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood Stephane Guindon & Olivier Gascuel http://atgc.lirmm.fr/phyml Copyright CNRS - Universite Montpellier II oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Sequence file : phyml3xY5zEvs/input.phy . Data set : #1 . Tree search : NNIs. Initial tree : BIONJ . Model of nucleotides substitution : HKY85 . Number of taxa : 82 . Log-likelihood : -832.60809 . Discrete gamma model : Yes - Number of categories : 4 - Gamma shape parameter : 1.864 . Proportion of invariant : 0.398 . Transition/transversion ratio : 5.513 . Nucleotides frequencies : - f(A)= 0.20000 - f(C)= 0.28783 - f(G)= 0.27317 - f(T)= 0.23900 . Time used 0h0m12s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo