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                                  ---  PhyML v3.0  ---                                             
                                                                                                  
    A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood    
                            Stephane Guindon & Olivier Gascuel                                      
                                                                                                  
                                http://atgc.lirmm.fr/phyml                                          
                                                                                                  
                         Copyright CNRS - Universite Montpellier II                                 
                                                                                                  
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. Sequence file : phymlPObRRQfe/input.phy
. Data set : #1
. Tree search : NNIs. Initial tree : BIONJ
. Model of nucleotides substitution : HKY85
. Number of taxa : 89
. Log-likelihood : -1252.85234
. Discrete gamma model : Yes
  - Number of categories : 4
  - Gamma shape parameter : 0.528
. Proportion of invariant : 0.000
. Transition/transversion ratio : 6.705
. Nucleotides frequencies :
  - f(A)= 0.17909
  - f(C)= 0.31285
  - f(G)= 0.28004
  - f(T)= 0.22802
. Time used 0h0m20s
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