oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo --- PhyML v3.0 --- A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood Stephane Guindon & Olivier Gascuel http://atgc.lirmm.fr/phyml Copyright CNRS - Universite Montpellier II oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Sequence file : phyml3QyU46Jy/input.phy . Data set : #1 . Tree search : NNIs. Initial tree : BIONJ . Model of nucleotides substitution : HKY85 . Number of taxa : 4 . Log-likelihood : -2860.49456 . Discrete gamma model : Yes - Number of categories : 4 - Gamma shape parameter : 4.794 . Proportion of invariant : 0.596 . Transition/transversion ratio : 3.581 . Nucleotides frequencies : - f(A)= 0.26278 - f(C)= 0.22334 - f(G)= 0.30945 - f(T)= 0.20443 . Time used 0h0m1s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo