Phylogeny.fr: "One Click" Mode

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"One Click" Mode

Alignment
MUSCLE

Curation
Gblocks

Phylogeny
PhyML

Tree Rendering
TreeDyn

Help

Alignment results

Figure 1: Sequence alignment.
Legend:
Similar residues are colored as the most conserved one (according to BLOSUM62).
Average BLOSUM62 score: Max: 3.0 Mid: 1.5 Low: 0.5

Input:

Sequences

Outputs:

Alignment in Fasta format

Alignment in Phylip format

Alignment in Clustal format

Taxon names association table

Download taxon names association table

Multiple sequence alignment editor:

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(If you expect to edit the alignment by yourself, you can consult Jalview multiple alignment editor documentation doc

Please cite:

Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)

Centre
National
de la
Recherche
Scientifique

Output Taxon Name	Original (Long) Taxon Name

sp_P18052_PTPRA_MOUSE_Receptor-type_tyrosine-protein_phosphatase	sp\|P18052\|PTPRA_MOUSE_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Mus_m	(Guide tree)
sp_P18433_PTPRA_HUMAN_Receptor-type_tyrosine-protein_phosphatase	sp\|P18433\|PTPRA_HUMAN_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Homo	(Guide tree)
sp_Q03348_PTPRA_RAT_Receptor-type_tyrosine-protein_phosphatase_a	sp\|Q03348\|PTPRA_RAT_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Rattus	(Guide tree)
sp\|P18052\|	sp\|P18052\|PTPRA_MOUSE_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Mus_m	(HTML, PHYLIP, Clustal)
sp\|P18052\|PTPRA_MOUSE_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Mus_m	sp\|P18052\|PTPRA_MOUSE_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Mus_m	(FASTA)
sp\|P18433\|	sp\|P18433\|PTPRA_HUMAN_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Homo	(HTML, Clustal, PHYLIP)
sp\|P18433\|PTPRA_HUMAN_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Homo	sp\|P18433\|PTPRA_HUMAN_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Homo	(FASTA)
sp\|Q03348\|	sp\|Q03348\|PTPRA_RAT_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Rattus	(HTML, PHYLIP, Clustal)
sp\|Q03348\|PTPRA_RAT_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Rattus	sp\|Q03348\|PTPRA_RAT_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Rattus	(FASTA)
tr_A0A3P9DNF2_A0A3P9DNF2_9CICH_Receptor-type_tyrosine-protein_ph	tr\|A0A3P9DNF2\|A0A3P9DNF2_9CICH_Receptor-type_tyrosine-protein_phosphatase_alpha	(Guide tree)
tr_A0A8V0YWD3_A0A8V0YWD3_CHICK_Receptor-type_tyrosine-protein_ph	tr\|A0A8V0YWD3\|A0A8V0YWD3_CHICK_Receptor-type_tyrosine-protein_phosphatase_alpha	(Guide tree)
tr\|A0A3P9D	tr\|A0A3P9DNF2\|A0A3P9DNF2_9CICH_Receptor-type_tyrosine-protein_phosphatase_alpha	(HTML, PHYLIP, Clustal)
tr\|A0A3P9DNF2\|A0A3P9DNF2_9CICH_Receptor-type_tyrosine-protein_phosphatase_alpha	tr\|A0A3P9DNF2\|A0A3P9DNF2_9CICH_Receptor-type_tyrosine-protein_phosphatase_alpha	(FASTA)
tr\|A0A8V0Y	tr\|A0A8V0YWD3\|A0A8V0YWD3_CHICK_Receptor-type_tyrosine-protein_phosphatase_alpha	(Clustal, PHYLIP, HTML)
tr\|A0A8V0YWD3\|A0A8V0YWD3_CHICK_Receptor-type_tyrosine-protein_phosphatase_alpha	tr\|A0A8V0YWD3\|A0A8V0YWD3_CHICK_Receptor-type_tyrosine-protein_phosphatase_alpha	(FASTA)