Phylogeny.fr: "One Click" Mode

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"One Click" Mode

Alignment
MUSCLE

Curation
Gblocks

Phylogeny
PhyML

Tree Rendering
TreeDyn

Help

Alignment results

Figure 1: Sequence alignment.
Legend:
Similar residues are colored as the most conserved one (according to BLOSUM62).
Average BLOSUM62 score: Max: 3.0 Mid: 1.5 Low: 0.5

Input:

Sequences

Outputs:

Alignment in Fasta format

Alignment in Phylip format

Alignment in Clustal format

Taxon names association table

Download taxon names association table

Multiple sequence alignment editor:

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(If you expect to edit the alignment by yourself, you can consult Jalview multiple alignment editor documentation doc

Please cite:

Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)

Centre
National
de la
Recherche
Scientifique

Output Taxon Name	Original (Long) Taxon Name

A4VHQ3.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	A4VHQ3.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(FASTA)
A4VHQ3.1_1	A4VHQ3.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(HTML, Clustal, PHYLIP)
A4VHQ3.1_1-129_RecName_Full=Small_ribosomal_subunit_protein_uS11	A4VHQ3.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(Guide tree)
A4XZ67.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	A4XZ67.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(FASTA)
A4XZ67.1_1	A4XZ67.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(PHYLIP, HTML, Clustal)
A4XZ67.1_1-129_RecName_Full=Small_ribosomal_subunit_protein_uS11	A4XZ67.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(Guide tree)
A5VXS0.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	A5VXS0.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(FASTA)
A5VXS0.1_1	A5VXS0.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(HTML, Clustal, PHYLIP)
A5VXS0.1_1-129_RecName_Full=Small_ribosomal_subunit_protein_uS11	A5VXS0.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(Guide tree)
A6UZL1.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	A6UZL1.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(FASTA)
A6UZL1.1_1	A6UZL1.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(PHYLIP, HTML, Clustal)
A6UZL1.1_1-129_RecName_Full=Small_ribosomal_subunit_protein_uS11	A6UZL1.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(Guide tree)
B0KK89.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	B0KK89.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(FASTA)
B0KK89.1_1	B0KK89.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(PHYLIP, HTML, Clustal)
B0KK89.1_1-129_RecName_Full=Small_ribosomal_subunit_protein_uS11	B0KK89.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(Guide tree)
B8GV35.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	B8GV35.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(FASTA)
B8GV35.1_1	B8GV35.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(HTML, Clustal, PHYLIP)
B8GV35.1_1-129_RecName_Full=Small_ribosomal_subunit_protein_uS11	B8GV35.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(Guide tree)
C3K2V3.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	C3K2V3.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(FASTA)
C3K2V3.1_1	C3K2V3.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(HTML, Clustal, PHYLIP)
C3K2V3.1_1-129_RecName_Full=Small_ribosomal_subunit_protein_uS11	C3K2V3.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(Guide tree)
GOS_131410	GOS_13141080_Translation_[334-741_indirect_strand]	(Clustal, HTML, PHYLIP)
GOS_13141080_Translation_334-741_indirect_strand	GOS_13141080_Translation_[334-741_indirect_strand]	(Guide tree)
GOS_13141080_Translation_[334-741_indirect_strand]	GOS_13141080_Translation_[334-741_indirect_strand]	(FASTA)
Q0ABF2.1:1-130_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	Q0ABF2.1:1-130_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(FASTA)
Q0ABF2.1_1	Q0ABF2.1:1-130_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(Clustal, HTML, PHYLIP)
Q0ABF2.1_1-130_RecName_Full=Small_ribosomal_subunit_protein_uS11	Q0ABF2.1:1-130_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(Guide tree)
Q0VSI0.1:6-132_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	Q0VSI0.1:6-132_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(FASTA)
Q0VSI0.1_6	Q0VSI0.1:6-132_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(Clustal, HTML, PHYLIP)
Q0VSI0.1_6-132_RecName_Full=Small_ribosomal_subunit_protein_uS11	Q0VSI0.1:6-132_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(Guide tree)
Q4K555.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	Q4K555.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(FASTA)
Q4K555.1_1	Q4K555.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(HTML, Clustal, PHYLIP)
Q4K555.1_1-129_RecName_Full=Small_ribosomal_subunit_protein_uS11	Q4K555.1:1-129_RecName:_Full=Small_ribosomal_subunit_protein_uS11;_AltName:_Ful	(Guide tree)