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Alignment
MUSCLE 
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Alignment results
Figure 1: Sequence alignment.
Legend:
Similar residues are colored as the most conserved one (according to BLOSUM62).
Average BLOSUM62 score: Max: 3.0 Mid: 1.5 Low: 0.5
Legend:
Similar residues are colored as the most conserved one (according to BLOSUM62).
Average BLOSUM62 score: Max: 3.0 Mid: 1.5 Low: 0.5
Input:
Outputs:
Alignment in Fasta format Alignment in Phylip format Alignment in Clustal formatTaxon names association table
| Output Taxon Name | Original (Long) Taxon Name | |
|---|---|---|
| Anolis_alu | Anolis_alutaceus | (Clustal, PHYLIP, HTML) |
| Anolis_alutaceus | Anolis_alutaceus | (Guide tree, FASTA) |
| Anolis_ang | Anolis_angusticeps | (Clustal, PHYLIP, HTML) |
| Anolis_angusticeps | Anolis_angusticeps | (Guide tree, FASTA) |
| Anolis_chl | Anolis_chlorocyanus | (Clustal, PHYLIP, HTML) |
| Anolis_chlorocyanus | Anolis_chlorocyanus | (FASTA, Guide tree) |
| Anolis_cri | Anolis_cristatellus | (Clustal, PHYLIP, HTML) |
| Anolis_cristatellus | Anolis_cristatellus | (FASTA, Guide tree) |
| Anolis_cyb | Anolis_cybotes | (HTML, PHYLIP, Clustal) |
| Anolis_cybotes | Anolis_cybotes | (FASTA, Guide tree) |
| Anolis_eve | Anolis_evermanni | (PHYLIP, Clustal, HTML) |
| Anolis_evermanni | Anolis_evermanni | (Guide tree, FASTA) |
| Anolis_gra | Anolis_grahami | (PHYLIP, Clustal, HTML) |
| Anolis_grahami | Anolis_grahami | (Guide tree, FASTA) |
| Anolis_lin | Anolis_lineatopus | (PHYLIP, Clustal, HTML) |
| Anolis_lineatopus | Anolis_lineatopus | (Guide tree, FASTA) |
| Anolis_occ | Anolis_occultus | (PHYLIP, Clustal, HTML) |
| Anolis_occultus | Anolis_occultus | (Guide tree, FASTA) |
| Anolis_ols | Anolis_olssoni | (HTML, PHYLIP, Clustal) |
| Anolis_olssoni | Anolis_olssoni | (Guide tree, FASTA) |
| Anolis_oph | Anolis_ophiolepis | (HTML, Clustal, PHYLIP) |
| Anolis_ophiolepis | Anolis_ophiolepis | (Guide tree, FASTA) |
| Anolis_por | Anolis_porcatus | (HTML, PHYLIP, Clustal) |
| Anolis_porcatus | Anolis_porcatus | (FASTA, Guide tree) |
| Anolis_pul | Anolis_pulchellus | (Clustal, PHYLIP, HTML) |
| Anolis_pulchellus | Anolis_pulchellus | (FASTA, Guide tree) |
| Anolis_sag | Anolis_sagrei | (HTML, Clustal, PHYLIP) |
| Anolis_sagrei | Anolis_sagrei | (FASTA, Guide tree) |
| Anolis_she | Anolis_sheplani | (HTML, Clustal, PHYLIP) |
| Anolis_sheplani | Anolis_sheplani | (Guide tree, FASTA) |
| Anolis_val | Anolis_valencienni | (PHYLIP, Clustal, HTML) |
| Anolis_valencienni | Anolis_valencienni | (Guide tree, FASTA) |
| Leiocephal | Leiocephalus_barahonensis | (Clustal, PHYLIP, HTML) |
| Leiocephalus_barahonensis | Leiocephalus_barahonensis | (Guide tree, FASTA) |
Download taxon names association tableMultiple sequence alignment editor:
(If you expect to edit the alignment by yourself, you can consult Jalview multiple alignment editor documentation
.)Please cite:
- Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
- Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
- Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
