Phylogeny.fr: "One Click" Mode

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Alignment
MUSCLE

Curation
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Phylogeny
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Alignment results

Figure 1: Sequence alignment.
Legend:
Similar residues are colored as the most conserved one (according to BLOSUM62).
Average BLOSUM62 score: Max: 3.0 Mid: 1.5 Low: 0.5

Input:

Sequences

Outputs:

Alignment in Fasta format

Alignment in Phylip format

Alignment in Clustal format

Taxon names association table

Download taxon names association table

Multiple sequence alignment editor:

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Please cite:

Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)

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Output Taxon Name	Original (Long) Taxon Name

AF516745.1	AF516745.1_Cylindrospermopsis_raciborskii_strain_Florida_F_16S_ribosomal_RNA_ge	(Clustal, HTML, PHYLIP)
AF516745.1_Cylindrospermopsis_raciborskii_strain_Florida_F_16S_r	AF516745.1_Cylindrospermopsis_raciborskii_strain_Florida_F_16S_ribosomal_RNA_ge	(Guide tree)
AF516745.1_Cylindrospermopsis_raciborskii_strain_Florida_F_16S_ribosomal_RNA_ge	AF516745.1_Cylindrospermopsis_raciborskii_strain_Florida_F_16S_ribosomal_RNA_ge	(FASTA)
NR_074314.	NR_074314.1_Microcystis_aeruginosa_strain_NIES-843_16S_ribosomal_RNA,_complete	(Clustal, PHYLIP, HTML)
NR_074314.1_Microcystis_aeruginosa_strain_NIES-843_16S_ribosomal	NR_074314.1_Microcystis_aeruginosa_strain_NIES-843_16S_ribosomal_RNA,_complete	(Guide tree)
NR_074314.1_Microcystis_aeruginosa_strain_NIES-843_16S_ribosomal_RNA,_complete	NR_074314.1_Microcystis_aeruginosa_strain_NIES-843_16S_ribosomal_RNA,_complete	(FASTA)
NR_074317.	NR_074317.1_Nostoc_punctiforme_PCC_73102_16S_ribosomal_RNA,_complete_sequence	(PHYLIP, HTML, Clustal)
NR_074317.1_Nostoc_punctiforme_PCC_73102_16S_ribosomal_RNA,_complete_sequence	NR_074317.1_Nostoc_punctiforme_PCC_73102_16S_ribosomal_RNA,_complete_sequence	(FASTA)
NR_074317.1_Nostoc_punctiforme_PCC_73102_16S_ribosomal_RNA_compl	NR_074317.1_Nostoc_punctiforme_PCC_73102_16S_ribosomal_RNA,_complete_sequence	(Guide tree)
NR_102457.	NR_102457.1_Anabaena_cylindrica_PCC_7122_16S_ribosomal_RNA,_partial_sequence	(PHYLIP, HTML, Clustal)
NR_102457.1_Anabaena_cylindrica_PCC_7122_16S_ribosomal_RNA,_partial_sequence	NR_102457.1_Anabaena_cylindrica_PCC_7122_16S_ribosomal_RNA,_partial_sequence	(FASTA)
NR_102457.1_Anabaena_cylindrica_PCC_7122_16S_ribosomal_RNA_parti	NR_102457.1_Anabaena_cylindrica_PCC_7122_16S_ribosomal_RNA,_partial_sequence	(Guide tree)
NR_114995.	NR_114995.1_Dulcicalothrix_desertica_PCC_7102_16S_ribosomal_RNA,_partial_sequen	(Clustal, HTML, PHYLIP)
NR_114995.1_Dulcicalothrix_desertica_PCC_7102_16S_ribosomal_RNA	NR_114995.1_Dulcicalothrix_desertica_PCC_7102_16S_ribosomal_RNA,_partial_sequen	(Guide tree)
NR_114995.1_Dulcicalothrix_desertica_PCC_7102_16S_ribosomal_RNA,_partial_sequen	NR_114995.1_Dulcicalothrix_desertica_PCC_7102_16S_ribosomal_RNA,_partial_sequen	(FASTA)
NR_125480.	NR_125480.1_Prochlorococcus_marinus_subsp._pastoris_strain_PCC_9511_16S_ribosom	(PHYLIP, HTML, Clustal)
NR_125480.1_Prochlorococcus_marinus_subsp._pastoris_strain_PCC_9	NR_125480.1_Prochlorococcus_marinus_subsp._pastoris_strain_PCC_9511_16S_ribosom	(Guide tree)
NR_125480.1_Prochlorococcus_marinus_subsp._pastoris_strain_PCC_9511_16S_ribosom	NR_125480.1_Prochlorococcus_marinus_subsp._pastoris_strain_PCC_9511_16S_ribosom	(FASTA)
NR_125599.	NR_125599.1_Limnospira_platensis_strain_PCC_7345_16S_ribosomal_RNA,_partial_seq	(Clustal, HTML, PHYLIP)
NR_125599.1_Limnospira_platensis_strain_PCC_7345_16S_ribosomal_R	NR_125599.1_Limnospira_platensis_strain_PCC_7345_16S_ribosomal_RNA,_partial_seq	(Guide tree)
NR_125599.1_Limnospira_platensis_strain_PCC_7345_16S_ribosomal_RNA,_partial_seq	NR_125599.1_Limnospira_platensis_strain_PCC_7345_16S_ribosomal_RNA,_partial_seq	(FASTA)