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Curation results
Figure 1: Selected alignment blocks (underlined in blue ).
Input:
Outputs:
Cured alignment in FASTA Format Cured alignment in PHYLIP FormatConserved positions: 98%
Taxon names association table
| Output Taxon Name | Original (Long) Taxon Name | |
|---|---|---|
| NC_000932. | NC_000932.1:54958-56397_rbcL_[organism=Arabidopsis_thaliana]_[GeneID=844754]_[c | (PHYLIP) |
| NC_000932.1:549 | NC_000932.1:54958-56397_rbcL_[organism=Arabidopsis_thaliana]_[GeneID=844754]_[c | (HTML) |
| NC_000932.1:54958-56397_rbcL_[organism=Arabidopsis_thaliana]_[GeneID=844754]_[c | NC_000932.1:54958-56397_rbcL_[organism=Arabidopsis_thaliana]_[GeneID=844754]_[c | (FASTA) |
| NC_000932.1_54958-56397_rbcL_organism=Arabidopsis_thaliana_GeneI | NC_000932.1:54958-56397_rbcL_[organism=Arabidopsis_thaliana]_[GeneID=844754]_[c | (Guide tree) |
| NC_001675. | NC_001675.1:c92774-91347_rbcL_[organism=Cyanophora_paradoxa]_[GeneID=801657]_[c | (PHYLIP) |
| NC_001675.1:c92 | NC_001675.1:c92774-91347_rbcL_[organism=Cyanophora_paradoxa]_[GeneID=801657]_[c | (HTML) |
| NC_001675.1:c92774-91347_rbcL_[organism=Cyanophora_paradoxa]_[GeneID=801657]_[c | NC_001675.1:c92774-91347_rbcL_[organism=Cyanophora_paradoxa]_[GeneID=801657]_[c | (FASTA) |
| NC_001675.1_c92774-91347_rbcL_organism=Cyanophora_paradoxa_GeneI | NC_001675.1:c92774-91347_rbcL_[organism=Cyanophora_paradoxa]_[GeneID=801657]_[c | (Guide tree) |
| NC_004766. | NC_004766.1:51894-53321_rbcL_[organism=Adiantum_capillus-veneris]_[GeneID=80734 | (PHYLIP) |
| NC_004766.1:518 | NC_004766.1:51894-53321_rbcL_[organism=Adiantum_capillus-veneris]_[GeneID=80734 | (HTML) |
| NC_004766.1:51894-53321_rbcL_[organism=Adiantum_capillus-veneris]_[GeneID=80734 | NC_004766.1:51894-53321_rbcL_[organism=Adiantum_capillus-veneris]_[GeneID=80734 | (FASTA) |
| NC_004766.1_51894-53321_rbcL_organism=Adiantum_capillus-veneris | NC_004766.1:51894-53321_rbcL_[organism=Adiantum_capillus-veneris]_[GeneID=80734 | (Guide tree) |
| NC_005353. | NC_005353.1:c123917-122490_rbcL_[organism=Chlamydomonas_reinhardtii]_[GeneID=27 | (PHYLIP) |
| NC_005353.1:c12 | NC_005353.1:c123917-122490_rbcL_[organism=Chlamydomonas_reinhardtii]_[GeneID=27 | (HTML) |
| NC_005353.1:c123917-122490_rbcL_[organism=Chlamydomonas_reinhardtii]_[GeneID=27 | NC_005353.1:c123917-122490_rbcL_[organism=Chlamydomonas_reinhardtii]_[GeneID=27 | (FASTA) |
| NC_005353.1_c123917-122490_rbcL_organism=Chlamydomonas_reinhardt | NC_005353.1:c123917-122490_rbcL_[organism=Chlamydomonas_reinhardtii]_[GeneID=27 | (Guide tree) |
| NC_021440. | NC_021440.1:c45170-43743_rbcL_[organism=Pinus_taeda]_[GeneID=15824524]_[chromos | (PHYLIP) |
| NC_021440.1:c45 | NC_021440.1:c45170-43743_rbcL_[organism=Pinus_taeda]_[GeneID=15824524]_[chromos | (HTML) |
| NC_021440.1:c45170-43743_rbcL_[organism=Pinus_taeda]_[GeneID=15824524]_[chromos | NC_021440.1:c45170-43743_rbcL_[organism=Pinus_taeda]_[GeneID=15824524]_[chromos | (FASTA) |
| NC_021440.1_c45170-43743_rbcL_organism=Pinus_taeda_GeneID=158245 | NC_021440.1:c45170-43743_rbcL_[organism=Pinus_taeda]_[GeneID=15824524]_[chromos | (Guide tree) |
| NC_037465. | NC_037465.1:c25865-24438_rbcL_[organism=Physcomitrium_patens]_[GeneID=36487139] | (PHYLIP) |
| NC_037465.1:c25 | NC_037465.1:c25865-24438_rbcL_[organism=Physcomitrium_patens]_[GeneID=36487139] | (HTML) |
| NC_037465.1:c25865-24438_rbcL_[organism=Physcomitrium_patens]_[GeneID=36487139] | NC_037465.1:c25865-24438_rbcL_[organism=Physcomitrium_patens]_[GeneID=36487139] | (FASTA) |
| NC_037465.1_c25865-24438_rbcL_organism=Physcomitrium_patens_Gene | NC_037465.1:c25865-24438_rbcL_[organism=Physcomitrium_patens]_[GeneID=36487139] | (Guide tree) |
Download taxon names association tableMultiple sequence alignment editor:
(If you expect to edit the alignment by yourself, you can consult Jalview multiple alignment editor documentation
.)Please cite:
- Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
- Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
- Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
- Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, Apr;17(4):540-52. (PubMed)
