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Alignment
MUSCLE 
Curation
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Curation results
Figure 1: Selected alignment blocks (underlined in blue ).
Input:
Outputs:
Cured alignment in FASTA Format Cured alignment in PHYLIP FormatConserved positions: 56%
Taxon names association table
| Output Taxon Name | Original (Long) Taxon Name | |
|---|---|---|
| Brown_rat | Brown_rat_Rattus_norvegicus | (PHYLIP) |
| Brown_rat_Rattu | Brown_rat_Rattus_norvegicus | (HTML) |
| Brown_rat_Rattus_norvegicus | Brown_rat_Rattus_norvegicus | (Guide tree, FASTA) |
| dog_Canis | dog_Canis_lupus | (PHYLIP) |
| dog_Canis_lupus | dog_Canis_lupus | (HTML, FASTA, Guide tree) |
| Domestic_c | Domestic_cat_Felis_catus | (PHYLIP) |
| Domestic_cat_Fe | Domestic_cat_Felis_catus | (HTML) |
| Domestic_cat_Felis_catus | Domestic_cat_Felis_catus | (FASTA, Guide tree) |
| Gerbil_Mer | Gerbil_Meriones_unguiculatus | (PHYLIP) |
| Gerbil_Meriones | Gerbil_Meriones_unguiculatus | (HTML) |
| Gerbil_Meriones_unguiculatus | Gerbil_Meriones_unguiculatus | (Guide tree, FASTA) |
| human_Homo | human_Homo_sapiens | (PHYLIP) |
| human_Homo_sapi | human_Homo_sapiens | (HTML) |
| human_Homo_sapiens | human_Homo_sapiens | (FASTA, Guide tree) |
| Mouse_Mus | Mouse_Mus_musculus | (PHYLIP) |
| Mouse_Mus_muscu | Mouse_Mus_musculus | (HTML) |
| Mouse_Mus_musculus | Mouse_Mus_musculus | (Guide tree, FASTA) |
| Olive_babo | Olive_baboon_Papio_anubis | (PHYLIP) |
| Olive_baboon_Pa | Olive_baboon_Papio_anubis | (HTML) |
| Olive_baboon_Papio_anubis | Olive_baboon_Papio_anubis | (FASTA, Guide tree) |
| Sea_otter | Sea_otter_Enhydra_lutris | (PHYLIP) |
| Sea_otter_Enhyd | Sea_otter_Enhydra_lutris | (HTML) |
| Sea_otter_Enhydra_lutris | Sea_otter_Enhydra_lutris | (Guide tree, FASTA) |
| Striped_hy | Striped_hyena | (PHYLIP) |
| Striped_hyena | Striped_hyena | (FASTA, Guide tree, HTML) |
| Tarsier_Ca | Tarsier_Carlito_syrichta | (PHYLIP) |
| Tarsier_Carlito | Tarsier_Carlito_syrichta | (HTML) |
| Tarsier_Carlito_syrichta | Tarsier_Carlito_syrichta | (Guide tree, FASTA) |
| Western_lo | Western_lowland_gorilla_Gorilla_gorilla_gorilla | (PHYLIP) |
| Western_lowland | Western_lowland_gorilla_Gorilla_gorilla_gorilla | (HTML) |
| Western_lowland_gorilla_Gorilla_gorilla_gorilla | Western_lowland_gorilla_Gorilla_gorilla_gorilla | (Guide tree, FASTA) |
Download taxon names association tableMultiple sequence alignment editor:
(If you expect to edit the alignment by yourself, you can consult Jalview multiple alignment editor documentation
.)Please cite:
- Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
- Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
- Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
- Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, Apr;17(4):540-52. (PubMed)
