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Alignment
MUSCLE 
Curation
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Curation results
Figure 1: Selected alignment blocks (underlined in blue ).
Input:
Outputs:
Cured alignment in FASTA Format Cured alignment in PHYLIP FormatConserved positions: 50%
Taxon names association table
| Output Taxon Name | Original (Long) Taxon Name | |
|---|---|---|
| NC_000913. | NC_000913.3:4181245-4185273_Escherichia_coli_str._K-12_substr._MG1655,_complete | (PHYLIP) |
| NC_000913.3:418 | NC_000913.3:4181245-4185273_Escherichia_coli_str._K-12_substr._MG1655,_complete | (HTML) |
| NC_000913.3:4181245-4185273_Escherichia_coli_str._K-12_substr._MG1655,_complete | NC_000913.3:4181245-4185273_Escherichia_coli_str._K-12_substr._MG1655,_complete | (FASTA) |
| NC_000913.3_4181245-4185273_Escherichia_coli_str._K-12_substr._M | NC_000913.3:4181245-4185273_Escherichia_coli_str._K-12_substr._MG1655,_complete | (Guide tree) |
| NC_000962. | NC_000962.3:759807-763325_Mycobacterium_tuberculosis_H37Rv,_complete_genome | (PHYLIP) |
| NC_000962.3:759 | NC_000962.3:759807-763325_Mycobacterium_tuberculosis_H37Rv,_complete_genome | (HTML) |
| NC_000962.3:759807-763325_Mycobacterium_tuberculosis_H37Rv,_complete_genome | NC_000962.3:759807-763325_Mycobacterium_tuberculosis_H37Rv,_complete_genome | (FASTA) |
| NC_000962.3_759807-763325_Mycobacterium_tuberculosis_H37Rv_compl | NC_000962.3:759807-763325_Mycobacterium_tuberculosis_H37Rv,_complete_genome | (Guide tree) |
| NC_003197. | NC_003197.2:4370012-4374249_Salmonella_enterica_subsp._enterica_serovar_Typhimu | (PHYLIP) |
| NC_003197.2:437 | NC_003197.2:4370012-4374249_Salmonella_enterica_subsp._enterica_serovar_Typhimu | (HTML) |
| NC_003197.2:4370012-4374249_Salmonella_enterica_subsp._enterica_serovar_Typhimu | NC_003197.2:4370012-4374249_Salmonella_enterica_subsp._enterica_serovar_Typhimu | (FASTA) |
| NC_003197.2_4370012-4374249_Salmonella_enterica_subsp._enterica | NC_003197.2:4370012-4374249_Salmonella_enterica_subsp._enterica_serovar_Typhimu | (Guide tree) |
Download taxon names association tableMultiple sequence alignment editor:
(If you expect to edit the alignment by yourself, you can consult Jalview multiple alignment editor documentation
.)Please cite:
- Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
- Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
- Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
- Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, Apr;17(4):540-52. (PubMed)
