Phylogeny.fr: "One Click" Mode

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"One Click" Mode

Alignment
MUSCLE

Curation
Gblocks

Phylogeny
PhyML

Tree Rendering
TreeDyn

Help

Curation results

Figure 1: Selected alignment blocks (underlined in blue ).

Input:

Input raw alignment

Outputs:

Cured alignment in FASTA Format

Cured alignment in PHYLIP Format
Conserved positions: 81%

Taxon names association table

Table I: Taxon names association table
Output Taxon Name	Original (Long) Taxon Name

sp_P18052_PTPRA_MOUSE_Receptor-type_tyrosine-protein_phosphatase	sp\|P18052\|PTPRA_MOUSE_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Mus_m	(Guide tree)
sp_P18433_PTPRA_HUMAN_Receptor-type_tyrosine-protein_phosphatase	sp\|P18433\|PTPRA_HUMAN_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Homo	(Guide tree)
sp_Q03348_PTPRA_RAT_Receptor-type_tyrosine-protein_phosphatase_a	sp\|Q03348\|PTPRA_RAT_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Rattus	(Guide tree)
sp\|P18052\|	sp\|P18052\|PTPRA_MOUSE_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Mus_m	(PHYLIP)
sp\|P18052\|PTPRA	sp\|P18052\|PTPRA_MOUSE_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Mus_m	(HTML)
sp\|P18052\|PTPRA_MOUSE_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Mus_m	sp\|P18052\|PTPRA_MOUSE_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Mus_m	(FASTA)
sp\|P18433\|	sp\|P18433\|PTPRA_HUMAN_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Homo	(PHYLIP)
sp\|P18433\|PTPRA	sp\|P18433\|PTPRA_HUMAN_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Homo	(HTML)
sp\|P18433\|PTPRA_HUMAN_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Homo	sp\|P18433\|PTPRA_HUMAN_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Homo	(FASTA)
sp\|Q03348\|	sp\|Q03348\|PTPRA_RAT_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Rattus	(PHYLIP)
sp\|Q03348\|PTPRA	sp\|Q03348\|PTPRA_RAT_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Rattus	(HTML)
sp\|Q03348\|PTPRA_RAT_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Rattus	sp\|Q03348\|PTPRA_RAT_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Rattus	(FASTA)
tr_A0A3P9DNF2_A0A3P9DNF2_9CICH_Receptor-type_tyrosine-protein_ph	tr\|A0A3P9DNF2\|A0A3P9DNF2_9CICH_Receptor-type_tyrosine-protein_phosphatase_alpha	(Guide tree)
tr_A0A8V0YWD3_A0A8V0YWD3_CHICK_Receptor-type_tyrosine-protein_ph	tr\|A0A8V0YWD3\|A0A8V0YWD3_CHICK_Receptor-type_tyrosine-protein_phosphatase_alpha	(Guide tree)
tr\|A0A3P9D	tr\|A0A3P9DNF2\|A0A3P9DNF2_9CICH_Receptor-type_tyrosine-protein_phosphatase_alpha	(PHYLIP)
tr\|A0A3P9DNF2\|A	tr\|A0A3P9DNF2\|A0A3P9DNF2_9CICH_Receptor-type_tyrosine-protein_phosphatase_alpha	(HTML)
tr\|A0A3P9DNF2\|A0A3P9DNF2_9CICH_Receptor-type_tyrosine-protein_phosphatase_alpha	tr\|A0A3P9DNF2\|A0A3P9DNF2_9CICH_Receptor-type_tyrosine-protein_phosphatase_alpha	(FASTA)
tr\|A0A8V0Y	tr\|A0A8V0YWD3\|A0A8V0YWD3_CHICK_Receptor-type_tyrosine-protein_phosphatase_alpha	(PHYLIP)
tr\|A0A8V0YWD3\|A	tr\|A0A8V0YWD3\|A0A8V0YWD3_CHICK_Receptor-type_tyrosine-protein_phosphatase_alpha	(HTML)
tr\|A0A8V0YWD3\|A0A8V0YWD3_CHICK_Receptor-type_tyrosine-protein_phosphatase_alpha	tr\|A0A8V0YWD3\|A0A8V0YWD3_CHICK_Receptor-type_tyrosine-protein_phosphatase_alpha	(FASTA)

Download taxon names association table

Multiple sequence alignment editor:

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Please cite:

Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, Apr;17(4):540-52. (PubMed)

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Output Taxon Name	Original (Long) Taxon Name

sp_P18052_PTPRA_MOUSE_Receptor-type_tyrosine-protein_phosphatase	sp\|P18052\|PTPRA_MOUSE_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Mus_m	(Guide tree)
sp_P18433_PTPRA_HUMAN_Receptor-type_tyrosine-protein_phosphatase	sp\|P18433\|PTPRA_HUMAN_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Homo	(Guide tree)
sp_Q03348_PTPRA_RAT_Receptor-type_tyrosine-protein_phosphatase_a	sp\|Q03348\|PTPRA_RAT_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Rattus	(Guide tree)
sp\|P18052\|	sp\|P18052\|PTPRA_MOUSE_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Mus_m	(PHYLIP)
sp\|P18052\|PTPRA	sp\|P18052\|PTPRA_MOUSE_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Mus_m	(HTML)
sp\|P18052\|PTPRA_MOUSE_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Mus_m	sp\|P18052\|PTPRA_MOUSE_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Mus_m	(FASTA)
sp\|P18433\|	sp\|P18433\|PTPRA_HUMAN_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Homo	(PHYLIP)
sp\|P18433\|PTPRA	sp\|P18433\|PTPRA_HUMAN_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Homo	(HTML)
sp\|P18433\|PTPRA_HUMAN_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Homo	sp\|P18433\|PTPRA_HUMAN_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Homo	(FASTA)
sp\|Q03348\|	sp\|Q03348\|PTPRA_RAT_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Rattus	(PHYLIP)
sp\|Q03348\|PTPRA	sp\|Q03348\|PTPRA_RAT_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Rattus	(HTML)
sp\|Q03348\|PTPRA_RAT_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Rattus	sp\|Q03348\|PTPRA_RAT_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Rattus	(FASTA)
tr_A0A3P9DNF2_A0A3P9DNF2_9CICH_Receptor-type_tyrosine-protein_ph	tr\|A0A3P9DNF2\|A0A3P9DNF2_9CICH_Receptor-type_tyrosine-protein_phosphatase_alpha	(Guide tree)
tr_A0A8V0YWD3_A0A8V0YWD3_CHICK_Receptor-type_tyrosine-protein_ph	tr\|A0A8V0YWD3\|A0A8V0YWD3_CHICK_Receptor-type_tyrosine-protein_phosphatase_alpha	(Guide tree)
tr\|A0A3P9D	tr\|A0A3P9DNF2\|A0A3P9DNF2_9CICH_Receptor-type_tyrosine-protein_phosphatase_alpha	(PHYLIP)
tr\|A0A3P9DNF2\|A	tr\|A0A3P9DNF2\|A0A3P9DNF2_9CICH_Receptor-type_tyrosine-protein_phosphatase_alpha	(HTML)
tr\|A0A3P9DNF2\|A0A3P9DNF2_9CICH_Receptor-type_tyrosine-protein_phosphatase_alpha	tr\|A0A3P9DNF2\|A0A3P9DNF2_9CICH_Receptor-type_tyrosine-protein_phosphatase_alpha	(FASTA)
tr\|A0A8V0Y	tr\|A0A8V0YWD3\|A0A8V0YWD3_CHICK_Receptor-type_tyrosine-protein_phosphatase_alpha	(PHYLIP)
tr\|A0A8V0YWD3\|A	tr\|A0A8V0YWD3\|A0A8V0YWD3_CHICK_Receptor-type_tyrosine-protein_phosphatase_alpha	(HTML)
tr\|A0A8V0YWD3\|A0A8V0YWD3_CHICK_Receptor-type_tyrosine-protein_phosphatase_alpha	tr\|A0A8V0YWD3\|A0A8V0YWD3_CHICK_Receptor-type_tyrosine-protein_phosphatase_alpha	(FASTA)