A new version of phylogeny.fr is available: https://v2.phylogeny.fr/!
Feel free to try it and give us feedbacks ! This is still a beta version and all comments will help us to improve it.
Send your comments to : Phylogeny.fr <phylogeny@igs.cnrs-mrs.fr>
Feel free to try it and give us feedbacks ! This is still a beta version and all comments will help us to improve it.
Send your comments to : Phylogeny.fr <phylogeny@igs.cnrs-mrs.fr>
| "One Click" Mode |
Alignment
MUSCLE 
Curation
Gblocks
Phylogeny
PhyML
Tree Rendering
TreeDyn |
Help  |
Curation results
Figure 1: Selected alignment blocks (underlined in blue ).
Input:
Outputs:
Cured alignment in FASTA Format Cured alignment in PHYLIP FormatConserved positions: 16%
Taxon names association table
| Output Taxon Name | Original (Long) Taxon Name | |
|---|---|---|
| D.DNMT1 | Dog_DNMT1 | (PHYLIP) |
| D.DNMT3A | Dog_DNMT3A | (PHYLIP) |
| D.DNMT3B | Dog_DNMT3B | (PHYLIP) |
| Dog_DNMT1 | Dog_DNMT1 | (FASTA, Guide tree, HTML) |
| Dog_DNMT3A | Dog_DNMT3A | (HTML, Guide tree, FASTA) |
| Dog_DNMT3B | Dog_DNMT3B | (FASTA, HTML, Guide tree) |
| H.DNMT1 | Human_DNMT1 | (PHYLIP) |
| H.DNMT3A | Human_DNMT3A | (PHYLIP) |
| H.DNMT3B | Human_DNMT3B | (PHYLIP) |
| Human_DNMT1 | Human_DNMT1 | (FASTA, Guide tree, HTML) |
| Human_DNMT3A | Human_DNMT3A | (FASTA, Guide tree, HTML) |
| Human_DNMT3B | Human_DNMT3B | (HTML, Guide tree, FASTA) |
| M.Dnmt1 | Mouse_Dnmt1 | (PHYLIP) |
| M.Dnmt3a | Mouse_Dnmt3a | (PHYLIP) |
| M.Dnmt3b | Mouse_Dnmt3b | (PHYLIP) |
| Mouse_Dnmt1 | Mouse_Dnmt1 | (HTML, Guide tree, FASTA) |
| Mouse_Dnmt3a | Mouse_Dnmt3a | (HTML, Guide tree, FASTA) |
| Mouse_Dnmt3b | Mouse_Dnmt3b | (FASTA, Guide tree, HTML) |
Download taxon names association tableMultiple sequence alignment editor:
(If you expect to edit the alignment by yourself, you can consult Jalview multiple alignment editor documentation
.)Please cite:
- Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
- Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
- Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
- Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, Apr;17(4):540-52. (PubMed)
