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Alignment
MUSCLE 
Curation
Gblocks
Phylogeny
PhyML
Tree Rendering
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Curation results
Figure 1: Selected alignment blocks (underlined in blue ).
Input:
Outputs:
Cured alignment in FASTA Format Cured alignment in PHYLIP FormatConserved positions: 16%
Taxon names association table
| Output Taxon Name | Original (Long) Taxon Name | |
|---|---|---|
| Califo_a | Califo_a | (Guide tree, HTML, FASTA, PHYLIP) |
| Califo_b | Califo_b | (HTML, Guide tree, PHYLIP, FASTA) |
| Dog | Dog | (Guide tree, HTML, PHYLIP, FASTA) |
| Elephant_s | Elephant_seal | (PHYLIP) |
| Elephant_seal | Elephant_seal | (HTML, Guide tree, FASTA) |
| Harbor_sea | Harbor_seal | (PHYLIP) |
| Harbor_seal | Harbor_seal | (HTML, Guide tree, FASTA) |
| Hawaiian_m | Hawaiian_monk_seal | (PHYLIP) |
| Hawaiian_monk_s | Hawaiian_monk_seal | (HTML) |
| Hawaiian_monk_seal | Hawaiian_monk_seal | (FASTA, Guide tree) |
| Northern_A | Northern_American_river_otter | (PHYLIP) |
| Northern_Americ | Northern_American_river_otter | (HTML) |
| Northern_American_river_otter | Northern_American_river_otter | (FASTA, Guide tree) |
| Northern_r | Northern_raccoon | (PHYLIP) |
| Northern_raccoo | Northern_raccoon | (HTML) |
| Northern_raccoon | Northern_raccoon | (Guide tree, FASTA) |
| Sea_otter | Sea_otter | (PHYLIP, FASTA, Guide tree, HTML) |
Download taxon names association tableMultiple sequence alignment editor:
(If you expect to edit the alignment by yourself, you can consult Jalview multiple alignment editor documentation
.)Please cite:
- Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
- Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
- Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
- Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, Apr;17(4):540-52. (PubMed)
