Equipe MAB - LIRMM Information Genomique et Structurale
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Curation results


Figure 1: Selected alignment blocks (underlined in  blue ).
Input:
Input raw alignment

Outputs:
> Cured alignment in FASTA Format
> Cured alignment in PHYLIP Format
Conserved positions: 46%

Taxon names association table
Table I: Taxon names association table
Output Taxon NameOriginal (Long) Taxon Name 
   
CAI8394335CAI8394335.1:1-143_MAG:_Uncharacterised_protein_[Flavobacteriales_bacterium](PHYLIP) 
CAI8394335.1:1-CAI8394335.1:1-143_MAG:_Uncharacterised_protein_[Flavobacteriales_bacterium](HTML) 
CAI8394335.1:1-143_MAG:_Uncharacterised_protein_[Flavobacteriales_bacterium]CAI8394335.1:1-143_MAG:_Uncharacterised_protein_[Flavobacteriales_bacterium](FASTA) 
CAI8394335.1_1-143_MAG_Uncharacterised_protein_FlavobacterialesCAI8394335.1:1-143_MAG:_Uncharacterised_protein_[Flavobacteriales_bacterium](Guide tree) 
MBJ34778.1MBJ34778.1:1-143_hypothetical_protein_[Flavobacteriaceae_bacterium](PHYLIP) 
MBJ34778.1:1-14MBJ34778.1:1-143_hypothetical_protein_[Flavobacteriaceae_bacterium](HTML) 
MBJ34778.1:1-143_hypothetical_protein_[Flavobacteriaceae_bacterium]MBJ34778.1:1-143_hypothetical_protein_[Flavobacteriaceae_bacterium](FASTA) 
MBJ34778.1_1-143_hypothetical_protein_Flavobacteriaceae_bacteriuMBJ34778.1:1-143_hypothetical_protein_[Flavobacteriaceae_bacterium](Guide tree) 
MBL6655307MBL6655307.1:229-352_anhydro-N-acetylmuramic_acid_kinase_[Flavobacteriaceae_bac(PHYLIP) 
MBL6655307.1:22MBL6655307.1:229-352_anhydro-N-acetylmuramic_acid_kinase_[Flavobacteriaceae_bac(HTML) 
MBL6655307.1:229-352_anhydro-N-acetylmuramic_acid_kinase_[Flavobacteriaceae_bacMBL6655307.1:229-352_anhydro-N-acetylmuramic_acid_kinase_[Flavobacteriaceae_bac(FASTA) 
MBL6655307.1_229-352_anhydro-N-acetylmuramic_acid_kinase_FlavobaMBL6655307.1:229-352_anhydro-N-acetylmuramic_acid_kinase_[Flavobacteriaceae_bac(Guide tree) 
MBL6677812MBL6677812.1:1-143_hypothetical_protein_[Flavobacteriaceae_bacterium](PHYLIP) 
MBL6677812.1:1-MBL6677812.1:1-143_hypothetical_protein_[Flavobacteriaceae_bacterium](HTML) 
MBL6677812.1:1-143_hypothetical_protein_[Flavobacteriaceae_bacterium]MBL6677812.1:1-143_hypothetical_protein_[Flavobacteriaceae_bacterium](FASTA) 
MBL6677812.1_1-143_hypothetical_protein_Flavobacteriaceae_bacterMBL6677812.1:1-143_hypothetical_protein_[Flavobacteriaceae_bacterium](Guide tree) 
MDC3040236MDC3040236.1:1-143_hypothetical_protein_[Flavobacteriaceae_bacterium](PHYLIP) 
MDC3040236.1:1-MDC3040236.1:1-143_hypothetical_protein_[Flavobacteriaceae_bacterium](HTML) 
MDC3040236.1:1-143_hypothetical_protein_[Flavobacteriaceae_bacterium]MDC3040236.1:1-143_hypothetical_protein_[Flavobacteriaceae_bacterium](FASTA) 
MDC3040236.1_1-143_hypothetical_protein_Flavobacteriaceae_bacterMDC3040236.1:1-143_hypothetical_protein_[Flavobacteriaceae_bacterium](Guide tree) 
MEK9756083MEK9756083.1:1-143_hypothetical_protein_[Bacteroidota_bacterium](PHYLIP) 
MEK9756083.1:1-MEK9756083.1:1-143_hypothetical_protein_[Bacteroidota_bacterium](HTML) 
MEK9756083.1:1-143_hypothetical_protein_[Bacteroidota_bacterium]MEK9756083.1:1-143_hypothetical_protein_[Bacteroidota_bacterium](FASTA) 
MEK9756083.1_1-143_hypothetical_protein_Bacteroidota_bacteriumMEK9756083.1:1-143_hypothetical_protein_[Bacteroidota_bacterium](Guide tree) 
MEL0009846MEL0009846.1:229-352_anhydro-N-acetylmuramic_acid_kinase_[Flammeovirgaceae_bact(PHYLIP) 
MEL0009846.1:22MEL0009846.1:229-352_anhydro-N-acetylmuramic_acid_kinase_[Flammeovirgaceae_bact(HTML) 
MEL0009846.1:229-352_anhydro-N-acetylmuramic_acid_kinase_[Flammeovirgaceae_bactMEL0009846.1:229-352_anhydro-N-acetylmuramic_acid_kinase_[Flammeovirgaceae_bact(FASTA) 
MEL0009846.1_229-352_anhydro-N-acetylmuramic_acid_kinase_FlammeoMEL0009846.1:229-352_anhydro-N-acetylmuramic_acid_kinase_[Flammeovirgaceae_bact(Guide tree) 
MFL2631626MFL2631626.1:229-352_anhydro-N-acetylmuramic_acid_kinase_[Candidatus_Marisimpli(PHYLIP) 
MFL2631626.1:22MFL2631626.1:229-352_anhydro-N-acetylmuramic_acid_kinase_[Candidatus_Marisimpli(HTML) 
MFL2631626.1:229-352_anhydro-N-acetylmuramic_acid_kinase_[Candidatus_MarisimpliMFL2631626.1:229-352_anhydro-N-acetylmuramic_acid_kinase_[Candidatus_Marisimpli(FASTA) 
MFL2631626.1_229-352_anhydro-N-acetylmuramic_acid_kinase_CandidaMFL2631626.1:229-352_anhydro-N-acetylmuramic_acid_kinase_[Candidatus_Marisimpli(Guide tree) 
MFL2633685MFL2633685.1:1-143_hypothetical_protein_[Candidatus_Marisimplicoccus_sp.](PHYLIP) 
MFL2633685.1:1-MFL2633685.1:1-143_hypothetical_protein_[Candidatus_Marisimplicoccus_sp.](HTML) 
MFL2633685.1:1-143_hypothetical_protein_[Candidatus_Marisimplicoccus_sp.]MFL2633685.1:1-143_hypothetical_protein_[Candidatus_Marisimplicoccus_sp.](FASTA) 
MFL2633685.1_1-143_hypothetical_protein_Candidatus_MarisimplicocMFL2633685.1:1-143_hypothetical_protein_[Candidatus_Marisimplicoccus_sp.](Guide tree) 
> Download taxon names association table

Multiple sequence alignment editor:
    
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Please cite:
  1. Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
  2. Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
  3. Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
  4. Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, Apr;17(4):540-52. (PubMed)


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