| Ben Mather, BI103 Wi |
Alignment
MUSCLE 
Curation
Gblocks
Phylogeny
PhyML
Tree Rendering
TreeDyn |
Help  |
Curation results
Figure 1: Selected alignment blocks (underlined in blue ).
Input:
Outputs:
Cured alignment in FASTA Format Cured alignment in PHYLIP FormatConserved positions: 71%
Taxon names association table
| Output Taxon Name | Original (Long) Taxon Name | |
|---|---|---|
| Anolis_alu | Anolis_alutaceus | (PHYLIP) |
| Anolis_alutaceu | Anolis_alutaceus | (HTML) |
| Anolis_alutaceus | Anolis_alutaceus | (FASTA, Guide tree) |
| Anolis_ang | Anolis_angusticeps | (PHYLIP) |
| Anolis_angustic | Anolis_angusticeps | (HTML) |
| Anolis_angusticeps | Anolis_angusticeps | (FASTA, Guide tree) |
| Anolis_chl | Anolis_chlorocyanus | (PHYLIP) |
| Anolis_chlorocy | Anolis_chlorocyanus | (HTML) |
| Anolis_chlorocyanus | Anolis_chlorocyanus | (Guide tree, FASTA) |
| Anolis_cri | Anolis_cristatellus | (PHYLIP) |
| Anolis_cristate | Anolis_cristatellus | (HTML) |
| Anolis_cristatellus | Anolis_cristatellus | (FASTA, Guide tree) |
| Anolis_cyb | Anolis_cybotes | (PHYLIP) |
| Anolis_cybotes | Anolis_cybotes | (HTML, Guide tree, FASTA) |
| Anolis_eve | Anolis_evermanni | (PHYLIP) |
| Anolis_evermann | Anolis_evermanni | (HTML) |
| Anolis_evermanni | Anolis_evermanni | (FASTA, Guide tree) |
| Anolis_gra | Anolis_grahami | (PHYLIP) |
| Anolis_grahami | Anolis_grahami | (FASTA, Guide tree, HTML) |
| Anolis_lin | Anolis_lineatopus | (PHYLIP) |
| Anolis_lineatop | Anolis_lineatopus | (HTML) |
| Anolis_lineatopus | Anolis_lineatopus | (FASTA, Guide tree) |
| Anolis_occ | Anolis_occultus | (PHYLIP) |
| Anolis_occultus | Anolis_occultus | (HTML, Guide tree, FASTA) |
| Anolis_ols | Anolis_olssoni | (PHYLIP) |
| Anolis_olssoni | Anolis_olssoni | (FASTA, HTML, Guide tree) |
| Anolis_oph | Anolis_ophiolepis | (PHYLIP) |
| Anolis_ophiolep | Anolis_ophiolepis | (HTML) |
| Anolis_ophiolepis | Anolis_ophiolepis | (FASTA, Guide tree) |
| Anolis_por | Anolis_porcatus | (PHYLIP) |
| Anolis_porcatus | Anolis_porcatus | (Guide tree, HTML, FASTA) |
| Anolis_pul | Anolis_pulchellus | (PHYLIP) |
| Anolis_pulchell | Anolis_pulchellus | (HTML) |
| Anolis_pulchellus | Anolis_pulchellus | (FASTA, Guide tree) |
| Anolis_sag | Anolis_sagrei | (PHYLIP) |
| Anolis_sagrei | Anolis_sagrei | (FASTA, HTML, Guide tree) |
| Anolis_she | Anolis_sheplani | (PHYLIP) |
| Anolis_sheplani | Anolis_sheplani | (Guide tree, HTML, FASTA) |
| Anolis_val | Anolis_valencienni | (PHYLIP) |
| Anolis_valencie | Anolis_valencienni | (HTML) |
| Anolis_valencienni | Anolis_valencienni | (Guide tree, FASTA) |
| Leiocephal | Leiocephalus_barahonensis | (PHYLIP) |
| Leiocephalus_ba | Leiocephalus_barahonensis | (HTML) |
| Leiocephalus_barahonensis | Leiocephalus_barahonensis | (Guide tree, FASTA) |
Download taxon names association tableMultiple sequence alignment editor:
(If you expect to edit the alignment by yourself, you can consult Jalview multiple alignment editor documentation
.)Please cite:
- Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
- Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
- Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
- Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, Apr;17(4):540-52. (PubMed)
