| "One Click" Mode |
Alignment
MUSCLE 
Curation
Gblocks
Phylogeny
PhyML
Tree Rendering
TreeDyn |
Help  |
Curation results
Figure 1: Selected alignment blocks (underlined in blue ).
Input:
Outputs:
Cured alignment in FASTA Format Cured alignment in PHYLIP FormatConserved positions: 16%
Taxon names association table
| Output Taxon Name | Original (Long) Taxon Name | |
|---|---|---|
| AM086637.1 | AM086637.1_Acinetobacter_baumannii_partial_bla-oxa69_gene_for_Betalactamase,_st | (PHYLIP) |
| AM086637.1_Acin | AM086637.1_Acinetobacter_baumannii_partial_bla-oxa69_gene_for_Betalactamase,_st | (HTML) |
| AM086637.1_Acinetobacter_baumannii_partial_bla-oxa69_gene_for_Be | AM086637.1_Acinetobacter_baumannii_partial_bla-oxa69_gene_for_Betalactamase,_st | (Guide tree) |
| AM086637.1_Acinetobacter_baumannii_partial_bla-oxa69_gene_for_Betalactamase,_st | AM086637.1_Acinetobacter_baumannii_partial_bla-oxa69_gene_for_Betalactamase,_st | (FASTA) |
| CAD20312.1 | CAD20312.1_amylase_[Tetraodon_nigroviridis] | (PHYLIP) |
| CAD20312.1_amyl | CAD20312.1_amylase_[Tetraodon_nigroviridis] | (HTML) |
| CAD20312.1_amylase_[Tetraodon_nigroviridis] | CAD20312.1_amylase_[Tetraodon_nigroviridis] | (FASTA) |
| CAD20312.1_amylase_Tetraodon_nigroviridis | CAD20312.1_amylase_[Tetraodon_nigroviridis] | (Guide tree) |
| DQ071570.1 | DQ071570.1_Bacillus_licheniformis_strain_MKU_3_keratinase_gene,_complete_cds | (PHYLIP) |
| DQ071570.1_Baci | DQ071570.1_Bacillus_licheniformis_strain_MKU_3_keratinase_gene,_complete_cds | (HTML) |
| DQ071570.1_Bacillus_licheniformis_strain_MKU_3_keratinase_gene,_complete_cds | DQ071570.1_Bacillus_licheniformis_strain_MKU_3_keratinase_gene,_complete_cds | (FASTA) |
| DQ071570.1_Bacillus_licheniformis_strain_MKU_3_keratinase_gene_c | DQ071570.1_Bacillus_licheniformis_strain_MKU_3_keratinase_gene,_complete_cds | (Guide tree) |
Download taxon names association tableMultiple sequence alignment editor:
(If you expect to edit the alignment by yourself, you can consult Jalview multiple alignment editor documentation
.)Please cite:
- Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
- Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
- Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
- Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, Apr;17(4):540-52. (PubMed)
