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Alignment
MUSCLE 
Curation
Gblocks
Phylogeny
PhyML
Tree Rendering
TreeDyn |
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Curation results
Figure 1: Selected alignment blocks (underlined in blue ).
Input:
Outputs:
Cured alignment in FASTA Format Cured alignment in PHYLIP FormatConserved positions: 67%
Taxon names association table
| Output Taxon Name | Original (Long) Taxon Name | |
|---|---|---|
| Arabidopsi | Arabidopsis_thaliana | (PHYLIP) |
| Arabidopsis_tha | Arabidopsis_thaliana | (HTML) |
| Arabidopsis_thaliana | Arabidopsis_thaliana | (FASTA, Guide tree) |
| E.coli | E.coli | (Guide tree, PHYLIP, HTML, FASTA) |
| Shigella_f | Shigella_flexneri | (PHYLIP) |
| Shigella_flexne | Shigella_flexneri | (HTML) |
| Shigella_flexneri | Shigella_flexneri | (Guide tree, FASTA) |
| Staph.aure | Staph.aureus | (PHYLIP) |
| Staph.aureus | Staph.aureus | (FASTA, HTML, Guide tree) |
| Staph.epid | Staph.epidermidis | (PHYLIP) |
| Staph.epidermid | Staph.epidermidis | (HTML) |
| Staph.epidermidis | Staph.epidermidis | (Guide tree, FASTA) |
Download taxon names association tableMultiple sequence alignment editor:
(If you expect to edit the alignment by yourself, you can consult Jalview multiple alignment editor documentation
.)Please cite:
- Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
- Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
- Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
- Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, Apr;17(4):540-52. (PubMed)
