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Phylogeny results
Figure 1: Phylogenetic tree.
Input:
Outputs:
Tree in Newick format (automatically recognized by MEGA if installed) Statistics fileSubstitution model: HKY85
Gamma shape parameter: 1.210
Transition/transversion ratio: 5.638
Number of categories: 4
Proportion of invariant: 0.464
Taxon names association table
| Output Taxon Name | Original (Long) Taxon Name | |
|---|---|---|
| AustralasianGrebe | AustralasianGrebe | (Newick) |
| Bewick_sSwan | Bewick_sSwan | (Newick) |
| Black-browedAlbatross | Black-browedAlbatross | (Newick) |
| BlackSwan | BlackSwan | (Newick) |
| BlueAndYellowMacaw | BlueAndYellowMacaw | (Newick) |
| BlueMagpie | BlueMagpie | (Newick) |
| Chicken | Chicken | (Newick) |
| Cockatiel | Cockatiel | (Newick) |
| CommonBuzzard | CommonBuzzard | (Newick) |
| CommonMagpie | CommonMagpie | (Newick) |
| CrestedMyna | CrestedMyna | (Newick) |
| Dodo | Dodo | (Newick) |
| DomesticGoose | DomesticGoose | (Newick) |
| EaredDove | EaredDove | (Newick) |
| EasternTurtleDove | EasternTurtleDove | (Newick) |
| Emu | Emu | (Newick) |
| EurasianCollaredDove | EurasianCollaredDove | (Newick) |
| Flamingo | Flamingo | (Newick) |
| GreatSpottedKiwi | GreatSpottedKiwi | (Newick) |
| GreyParrot | GreyParrot | (Newick) |
| HawaiianBlack-footedAlbatross | HawaiianBlack-footedAlbatross | (Newick) |
| Kea | Kea | (Newick) |
| Mallard | Mallard | (Newick) |
| NewZealandPigeon | NewZealandPigeon | (Newick) |
| NicobarPigeon | NicobarPigeon | (Newick) |
| Ostrich | Ostrich | (Newick) |
| PeregrineFalcon | PeregrineFalcon | (Newick) |
| RockHopperPenguin | RockHopperPenguin | (Newick) |
| Silvery-cheekedHornbill | Silvery-cheekedHornbill | (Newick) |
| SouthernCrownedPigeon | SouthernCrownedPigeon | (Newick) |
| Turkey | Turkey | (Newick) |
| TurkeyVulture | TurkeyVulture | (Newick) |
| VictoriaCrownedPigeon | VictoriaCrownedPigeon | (Newick) |
| VulturineGuineafowl | VulturineGuineafowl | (Newick) |
| WhoopingCrane | WhoopingCrane | (Newick) |
Download taxon names association tableTree viewer:
(requires Java 1.6 or above)
Please cite:
- Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
- Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
- Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
- Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, Apr;17(4):540-52. (PubMed)
- Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 2003, Oct;52(5):696-704. (PubMed)
- Anisimova M., Gascuel O. Approximate likelihood ratio test for branchs: A fast, accurate and powerful alternative. Syst Biol. 2006, Aug;55(4):539-52. (PubMed)
