A new version of phylogeny.fr is available: https://v2.phylogeny.fr/!
Feel free to try it and give us feedbacks ! This is still a beta version and all comments will help us to improve it.
Send your comments to : Phylogeny.fr <phylogeny@igs.cnrs-mrs.fr>
Feel free to try it and give us feedbacks ! This is still a beta version and all comments will help us to improve it.
Send your comments to : Phylogeny.fr <phylogeny@igs.cnrs-mrs.fr>
| "One Click" Mode |
Alignment
MUSCLE 
Curation
Gblocks
Phylogeny
PhyML
Tree Rendering
TreeDyn |
Help  |
Phylogeny results
Figure 1: Phylogenetic tree.
Input:
Outputs:
Tree in Newick format (automatically recognized by MEGA if installed) Statistics fileSubstitution model: WAG
Gamma shape parameter: 0.819
Number of categories: 4
Proportion of invariant: 0.521
Taxon names association table
| Output Taxon Name | Original (Long) Taxon Name | |
|---|---|---|
| sp_P18052_PTPRA_MOUSE_Receptor-type_tyrosine-protein_phosphatase | sp|P18052|PTPRA_MOUSE_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Mus_m | (Newick) |
| sp_P18433_PTPRA_HUMAN_Receptor-type_tyrosine-protein_phosphatase | sp|P18433|PTPRA_HUMAN_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Homo | (Newick) |
| sp_Q03348_PTPRA_RAT_Receptor-type_tyrosine-protein_phosphatase_a | sp|Q03348|PTPRA_RAT_Receptor-type_tyrosine-protein_phosphatase_alpha_OS=Rattus | (Newick) |
| tr_A0A3P9DNF2_A0A3P9DNF2_9CICH_Receptor-type_tyrosine-protein_ph | tr|A0A3P9DNF2|A0A3P9DNF2_9CICH_Receptor-type_tyrosine-protein_phosphatase_alpha | (Newick) |
| tr_A0A8V0YWD3_A0A8V0YWD3_CHICK_Receptor-type_tyrosine-protein_ph | tr|A0A8V0YWD3|A0A8V0YWD3_CHICK_Receptor-type_tyrosine-protein_phosphatase_alpha | (Newick) |
Download taxon names association tableTree viewer:
(requires Java 1.6 or above)
Please cite:
- Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
- Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
- Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
- Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, Apr;17(4):540-52. (PubMed)
- Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 2003, Oct;52(5):696-704. (PubMed)
- Anisimova M., Gascuel O. Approximate likelihood ratio test for branchs: A fast, accurate and powerful alternative. Syst Biol. 2006, Aug;55(4):539-52. (PubMed)
