| Demonstrator test |
Alignment
MUSCLE 
Curation
Gblocks
Phylogeny
PhyML
Tree Rendering
TreeDyn |
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Phylogeny results
Figure 1: Phylogenetic tree.
Input:
Outputs:
Tree in Newick format (automatically recognized by MEGA if installed) Statistics fileSubstitution model: HKY85
Gamma shape parameter: 0.662
Transition/transversion ratio: 2.536
Number of categories: 4
Proportion of invariant: 0.546
Taxon names association table
| Output Taxon Name | Original (Long) Taxon Name | |
|---|---|---|
| AF516745.1_Cylindrospermopsis_raciborskii_strain_Florida_F_16S_r | AF516745.1_Cylindrospermopsis_raciborskii_strain_Florida_F_16S_ribosomal_RNA_ge | (Newick) |
| n2024_water_sample_16S | n2024_water_sample_16S | (Newick) |
| NR_074314.1_Microcystis_aeruginosa_strain_NIES-843_16S_ribosomal | NR_074314.1_Microcystis_aeruginosa_strain_NIES-843_16S_ribosomal_RNA,_complete | (Newick) |
| NR_074317.1_Nostoc_punctiforme_PCC_73102_16S_ribosomal_RNA_compl | NR_074317.1_Nostoc_punctiforme_PCC_73102_16S_ribosomal_RNA,_complete_sequence | (Newick) |
| NR_102457.1_Anabaena_cylindrica_PCC_7122_16S_ribosomal_RNA_parti | NR_102457.1_Anabaena_cylindrica_PCC_7122_16S_ribosomal_RNA,_partial_sequence | (Newick) |
| NR_114995.1_Dulcicalothrix_desertica_PCC_7102_16S_ribosomal_RNA | NR_114995.1_Dulcicalothrix_desertica_PCC_7102_16S_ribosomal_RNA,_partial_sequen | (Newick) |
| NR_125480.1_Prochlorococcus_marinus_subsp._pastoris_strain_PCC_9 | NR_125480.1_Prochlorococcus_marinus_subsp._pastoris_strain_PCC_9511_16S_ribosom | (Newick) |
| NR_125599.1_Limnospira_platensis_strain_PCC_7345_16S_ribosomal_R | NR_125599.1_Limnospira_platensis_strain_PCC_7345_16S_ribosomal_RNA,_partial_seq | (Newick) |
Download taxon names association tableTree viewer:
(requires Java 1.6 or above)
Please cite:
- Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
- Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
- Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
- Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, Apr;17(4):540-52. (PubMed)
- Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 2003, Oct;52(5):696-704. (PubMed)
- Anisimova M., Gascuel O. Approximate likelihood ratio test for branchs: A fast, accurate and powerful alternative. Syst Biol. 2006, Aug;55(4):539-52. (PubMed)
