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Alignment
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Curation
Gblocks
Phylogeny
PhyML
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Phylogeny results
Figure 1: Phylogenetic tree.
Input:
Outputs:
Tree in Newick format (automatically recognized by MEGA if installed) Statistics fileSubstitution model: WAG
Gamma shape parameter: 0.890
Number of categories: 4
Proportion of invariant: 0.045
Taxon names association table
| Output Taxon Name | Original (Long) Taxon Name | |
|---|---|---|
| AFR16036.1_hypothetical_protein_adjacent_to_AFR16037.1 | AFR16036.1_hypothetical_protein_[adjacent_to_AFR16037.1] | (Newick) |
| AWI75726.1_hypothetical_protein_adjacent_to_A0A2U8GQ08_9RHOO | AWI75726.1_hypothetical_protein_[adjacent_to_A0A2U8GQ08_9RHOO] | (Newick) |
| BAK78384.1_hypothetical_protein_adjacent_to_BAK78383.1 | BAK78384.1_hypothetical_protein_[adjacent_to_BAK78383.1] | (Newick) |
| BGR71326.1_hypothetical_protein_adjacent_to_BGR71327.1 | BGR71326.1_hypothetical_protein_[adjacent_to_BGR71327.1] | (Newick) |
| C8261_01635_hypothetical_protein_adjacent_to_A0A2T4IKE0_9RHOO | C8261_01635_hypothetical_protein_[adjacent_to_A0A2T4IKE0_9RHOO] | (Newick) |
| E6C76_01770_hypothetical_protein_adjacent_to_A0A4S4B4D7_9RHOO | E6C76_01770_hypothetical_protein_[adjacent_to_A0A4S4B4D7_9RHOO] | (Newick) |
| E6O51_11500_hypothetical_protein_adjacent_to_A0A4S4ARD3_9RHOO | E6O51_11500_hypothetical_protein_[adjacent_to_A0A4S4ARD3_9RHOO] | (Newick) |
| EQA89253.1_hypothetical_protein_adjacent_to_EQA89254.1 | EQA89253.1_hypothetical_protein_[adjacent_to_EQA89254.1] | (Newick) |
| KJK04985.1_hypothetical_protein_adjacent_to_KJK04986.1 | KJK04985.1_hypothetical_protein_[adjacent_to_KJK04986.1] | (Newick) |
| NML27909.1_hypothetical_protein_adjacent_to_A0A848G6M5_9RHOO | NML27909.1_hypothetical_protein_[adjacent_to_A0A848G6M5_9RHOO] | (Newick) |
| OGA98747.1_hypothetical_protein_adjacent_to_OGA98751.1 | OGA98747.1_hypothetical_protein_[adjacent_to_OGA98751.1] | (Newick) |
| OGU23327.1_hypothetical_protein_adjacent_to_OGU23328.1 | OGU23327.1_hypothetical_protein_[adjacent_to_OGU23328.1] | (Newick) |
| OJW56986.1_hypothetical_protein_adjacent_to_OJW56985.1 | OJW56986.1_hypothetical_protein_[adjacent_to_OJW56985.1] | (Newick) |
| OJZ20336.1_hypothetical_protein_adjacent_to_OJZ20337.1 | OJZ20336.1_hypothetical_protein_[adjacent_to_OJZ20337.1] | (Newick) |
| OYY62404.1_hypothetical_protein_adjacent_to_OYY62403.1 | OYY62404.1_hypothetical_protein_[adjacent_to_OYY62403.1] | (Newick) |
| OZA28520.1_hypothetical_protein_adjacent_to_OZA28519.1 | OZA28520.1_hypothetical_protein_[adjacent_to_OZA28519.1] | (Newick) |
| PKM07068.1_hypothetical_protein_adjacent_to_PKM07067.1 | PKM07068.1_hypothetical_protein_[adjacent_to_PKM07067.1] | (Newick) |
| PKO55739.1_hypothetical_protein_adjacent_to_PKO55740.1 | PKO55739.1_hypothetical_protein_[adjacent_to_PKO55740.1] | (Newick) |
| PKO82349.1_hypothetical_protein_adjacent_to_PKO82348.1 | PKO82349.1_hypothetical_protein_[adjacent_to_PKO82348.1] | (Newick) |
| PLX75259.1_hypothetical_protein_adjacent_to_PLX75260.1 | PLX75259.1_hypothetical_protein_[adjacent_to_PLX75260.1] | (Newick) |
| QGZ57128.1_hypothetical_protein_adjacent_to_A0A7Z2J9T8_9BURK | QGZ57128.1_hypothetical_protein_[adjacent_to_A0A7Z2J9T8_9BURK] | (Newick) |
| QID19114.1_hypothetical_protein_adjacent_to_A0A6C1B6X6_9RHOO | QID19114.1_hypothetical_protein_[adjacent_to_A0A6C1B6X6_9RHOO] | (Newick) |
| RQH03870.1_hypothetical_protein_adjacent_to_A0A3N6MIR6_9BURK | RQH03870.1_hypothetical_protein_[adjacent_to_A0A3N6MIR6_9BURK] | (Newick) |
| SIR04960.1_hypothetical_protein_adjacent_to_A0A1N6XRP9_9RHOO | SIR04960.1_hypothetical_protein_[adjacent_to_A0A1N6XRP9_9RHOO] | (Newick) |
| TAH43878.1_hypothetical_protein_adjacent_to_TAH43877.1 | TAH43878.1_hypothetical_protein_[adjacent_to_TAH43877.1] | (Newick) |
| TCV83273.1_hypothetical_protein_adjacent_to_A0A4R3XZI7_9PROT | TCV83273.1_hypothetical_protein_[adjacent_to_A0A4R3XZI7_9PROT] | (Newick) |
| TDR81532.1_hypothetical_protein_adjacent_to_A0A4R7B9M6_9NEIS | TDR81532.1_hypothetical_protein_[adjacent_to_A0A4R7B9M6_9NEIS] | (Newick) |
| TVT57058.1_hypothetical_protein_adjacent_to_TVT57057.1 | TVT57058.1_hypothetical_protein_[adjacent_to_TVT57057.1] | (Newick) |
| WP_004193682.1_hypothetical_protein_adjacent_to_WP_076927917.1 | WP_004193682.1_hypothetical_protein_[adjacent_to_WP_076927917.1] | (Newick) |
| WP_004264038.1_hypothetical_protein_adjacent_to_WP_004264036.1 | WP_004264038.1_hypothetical_protein_[adjacent_to_WP_004264036.1] | (Newick) |
| WP_004305209.1_hypothetical_protein_adjacent_to_WP_004305210.1 | WP_004305209.1_hypothetical_protein_[adjacent_to_WP_004305210.1] | (Newick) |
| WP_011465476.1_hypothetical_protein_adjacent_to_WP_422620805.1 | WP_011465476.1_hypothetical_protein_[adjacent_to_WP_422620805.1] | (Newick) |
| WP_018077131.1_hypothetical_protein_adjacent_to_WP_018077132.1 | WP_018077131.1_hypothetical_protein_[adjacent_to_WP_018077132.1] | (Newick) |
| WP_021249416.1_hypothetical_protein_adjacent_to_WP_021249417.1 | WP_021249416.1_hypothetical_protein_[adjacent_to_WP_021249417.1] | (Newick) |
| WP_024978422.1_hypothetical_protein_adjacent_to_WP_232039934.1 | WP_024978422.1_hypothetical_protein_[adjacent_to_WP_232039934.1] | (Newick) |
| WP_028207466.1_hypothetical_protein_adjacent_to_WP_028207467.1 | WP_028207466.1_hypothetical_protein_[adjacent_to_WP_028207467.1] | (Newick) |
| WP_059754696.1_hypothetical_protein_adjacent_to_WP_059754699.1 | WP_059754696.1_hypothetical_protein_[adjacent_to_WP_059754699.1] | (Newick) |
| WP_068639282.1_hypothetical_protein_adjacent_to_WP_068639283.1 | WP_068639282.1_hypothetical_protein_[adjacent_to_WP_068639283.1] | (Newick) |
| WP_068808760.1_hypothetical_protein_adjacent_to_WP_068808761.1 | WP_068808760.1_hypothetical_protein_[adjacent_to_WP_068808761.1] | (Newick) |
| WP_075147044.1_hypothetical_protein_adjacent_to_WP_075147043.1 | WP_075147044.1_hypothetical_protein_[adjacent_to_WP_075147043.1] | (Newick) |
| WP_076602821.1_hypothetical_protein_adjacent_to_WP_076602822.1 | WP_076602821.1_hypothetical_protein_[adjacent_to_WP_076602822.1] | (Newick) |
| WP_077563083.1_hypothetical_protein_adjacent_to_WP_077563098.1 | WP_077563083.1_hypothetical_protein_[adjacent_to_WP_077563098.1] | (Newick) |
| WP_079433984.1_hypothetical_protein_adjacent_to_WP_079433985.1 | WP_079433984.1_hypothetical_protein_[adjacent_to_WP_079433985.1] | (Newick) |
| WP_094268824.1_hypothetical_protein_adjacent_to_WP_094268825.1 | WP_094268824.1_hypothetical_protein_[adjacent_to_WP_094268825.1] | (Newick) |
| WP_102646860.1_hypothetical_protein_adjacent_to_WP_102646990.1 | WP_102646860.1_hypothetical_protein_[adjacent_to_WP_102646990.1] | (Newick) |
| WP_124947117.1_hypothetical_protein_adjacent_to_WP_124947118.1 | WP_124947117.1_hypothetical_protein_[adjacent_to_WP_124947118.1] | (Newick) |
| WP_141349336.1_hypothetical_protein_adjacent_to_WP_141349335.1 | WP_141349336.1_hypothetical_protein_[adjacent_to_WP_141349335.1] | (Newick) |
| WP_148578464.1_hypothetical_protein_adjacent_to_WP_288039717.1 | WP_148578464.1_hypothetical_protein_[adjacent_to_WP_288039717.1] | (Newick) |
| WP_153160880.1_hypothetical_protein_adjacent_to_WP_153160879.1 | WP_153160880.1_hypothetical_protein_[adjacent_to_WP_153160879.1] | (Newick) |
| WP_153169940.1_hypothetical_protein_adjacent_to_WP_153169941.1 | WP_153169940.1_hypothetical_protein_[adjacent_to_WP_153169941.1] | (Newick) |
| WP_247724225.1_hypothetical_protein_adjacent_to_WP_247724224.1 | WP_247724225.1_hypothetical_protein_[adjacent_to_WP_247724224.1] | (Newick) |
| WP_263463040.1_hypothetical_protein_adjacent_to_WP_263463041.1 | WP_263463040.1_hypothetical_protein_[adjacent_to_WP_263463041.1] | (Newick) |
| WP_273421224.1_hypothetical_protein_adjacent_to_WP_273421226.1 | WP_273421224.1_hypothetical_protein_[adjacent_to_WP_273421226.1] | (Newick) |
| WP_277428258.1_hypothetical_protein_adjacent_to_WP_277428257.1 | WP_277428258.1_hypothetical_protein_[adjacent_to_WP_277428257.1] | (Newick) |
| WP_287634579.1_hypothetical_protein_adjacent_to_WP_287634578.1 | WP_287634579.1_hypothetical_protein_[adjacent_to_WP_287634578.1] | (Newick) |
| WP_293033748.1_hypothetical_protein_adjacent_to_WP_293033750.1 | WP_293033748.1_hypothetical_protein_[adjacent_to_WP_293033750.1] | (Newick) |
| WP_293034577.1_hypothetical_protein_adjacent_to_WP_293034578.1 | WP_293034577.1_hypothetical_protein_[adjacent_to_WP_293034578.1] | (Newick) |
| WP_293640899.1_hypothetical_protein_adjacent_to_WP_293640896.1 | WP_293640899.1_hypothetical_protein_[adjacent_to_WP_293640896.1] | (Newick) |
| WP_296229076.1_hypothetical_protein_adjacent_to_WP_296229075.1 | WP_296229076.1_hypothetical_protein_[adjacent_to_WP_296229075.1] | (Newick) |
| WP_296410598.1_hypothetical_protein_adjacent_to_WP_296410599.1 | WP_296410598.1_hypothetical_protein_[adjacent_to_WP_296410599.1] | (Newick) |
| WP_296573706.1_hypothetical_protein_adjacent_to_WP_296573710.1 | WP_296573706.1_hypothetical_protein_[adjacent_to_WP_296573710.1] | (Newick) |
| WP_296657221.1_hypothetical_protein_adjacent_to_WP_296657223.1 | WP_296657221.1_hypothetical_protein_[adjacent_to_WP_296657223.1] | (Newick) |
| WP_296659266.1_hypothetical_protein_adjacent_to_WP_296659262.1 | WP_296659266.1_hypothetical_protein_[adjacent_to_WP_296659262.1] | (Newick) |
| WP_296750947.1_hypothetical_protein_adjacent_to_WP_296750946.1 | WP_296750947.1_hypothetical_protein_[adjacent_to_WP_296750946.1] | (Newick) |
| WP_297358704.1_hypothetical_protein_adjacent_to_WP_297358700.1 | WP_297358704.1_hypothetical_protein_[adjacent_to_WP_297358700.1] | (Newick) |
| WP_298602512.1_hypothetical_protein_adjacent_to_WP_298602508.1 | WP_298602512.1_hypothetical_protein_[adjacent_to_WP_298602508.1] | (Newick) |
| WP_299868037.1_hypothetical_protein_adjacent_to_WP_299868039.1 | WP_299868037.1_hypothetical_protein_[adjacent_to_WP_299868039.1] | (Newick) |
| WP_299882235.1_hypothetical_protein_adjacent_to_WP_299882233.1 | WP_299882235.1_hypothetical_protein_[adjacent_to_WP_299882233.1] | (Newick) |
| WP_299903157.1_hypothetical_protein_adjacent_to_WP_299903159.1 | WP_299903157.1_hypothetical_protein_[adjacent_to_WP_299903159.1] | (Newick) |
| WP_300438859.1_hypothetical_protein_adjacent_to_WP_300438862.1 | WP_300438859.1_hypothetical_protein_[adjacent_to_WP_300438862.1] | (Newick) |
| WP_305632364.1_hypothetical_protein_adjacent_to_WP_305632363.1 | WP_305632364.1_hypothetical_protein_[adjacent_to_WP_305632363.1] | (Newick) |
| WP_310447936.1_hypothetical_protein_adjacent_to_WP_296886595.1 | WP_310447936.1_hypothetical_protein_[adjacent_to_WP_296886595.1] | (Newick) |
| WP_312533351.1_hypothetical_protein_adjacent_to_WP_312533353.1 | WP_312533351.1_hypothetical_protein_[adjacent_to_WP_312533353.1] | (Newick) |
| WP_316673220.1_hypothetical_protein_adjacent_to_WP_413412697.1 | WP_316673220.1_hypothetical_protein_[adjacent_to_WP_413412697.1] | (Newick) |
| WP_320362873.1_hypothetical_protein_adjacent_to_WP_320362871.1 | WP_320362873.1_hypothetical_protein_[adjacent_to_WP_320362871.1] | (Newick) |
| WP_324127742.1_hypothetical_protein_adjacent_to_WP_324127741.1 | WP_324127742.1_hypothetical_protein_[adjacent_to_WP_324127741.1] | (Newick) |
| WP_324516462.1_hypothetical_protein_adjacent_to_WP_324516461.1 | WP_324516462.1_hypothetical_protein_[adjacent_to_WP_324516461.1] | (Newick) |
| WP_324541735.1_hypothetical_protein_adjacent_to_WP_324541733.1 | WP_324541735.1_hypothetical_protein_[adjacent_to_WP_324541733.1] | (Newick) |
| WP_325337170.1_hypothetical_protein_adjacent_to_WP_325337172.1 | WP_325337170.1_hypothetical_protein_[adjacent_to_WP_325337172.1] | (Newick) |
| WP_325652451.1_hypothetical_protein_adjacent_to_WP_325652449.1 | WP_325652451.1_hypothetical_protein_[adjacent_to_WP_325652449.1] | (Newick) |
| WP_346287716.1_hypothetical_protein_adjacent_to_WP_346287715.1 | WP_346287716.1_hypothetical_protein_[adjacent_to_WP_346287715.1] | (Newick) |
| WP_347250318.1_hypothetical_protein_adjacent_to_WP_347250319.1 | WP_347250318.1_hypothetical_protein_[adjacent_to_WP_347250319.1] | (Newick) |
| WP_374241307.1_hypothetical_protein_adjacent_to_WP_374241306.1 | WP_374241307.1_hypothetical_protein_[adjacent_to_WP_374241306.1] | (Newick) |
| WP_374246341.1_hypothetical_protein_adjacent_to_WP_374246340.1 | WP_374246341.1_hypothetical_protein_[adjacent_to_WP_374246340.1] | (Newick) |
| WP_374261842.1_hypothetical_protein_adjacent_to_WP_374261840.1 | WP_374261842.1_hypothetical_protein_[adjacent_to_WP_374261840.1] | (Newick) |
| WP_374479607.1_hypothetical_protein_adjacent_to_WP_374479605.1 | WP_374479607.1_hypothetical_protein_[adjacent_to_WP_374479605.1] | (Newick) |
| WP_377712341.1_hypothetical_protein_adjacent_to_WP_377712343.1 | WP_377712341.1_hypothetical_protein_[adjacent_to_WP_377712343.1] | (Newick) |
| WP_416161908.1_hypothetical_protein_adjacent_to_WP_416161909.1 | WP_416161908.1_hypothetical_protein_[adjacent_to_WP_416161909.1] | (Newick) |
| WP_440474668.1_hypothetical_protein_adjacent_to_WP_440474667.1 | WP_440474668.1_hypothetical_protein_[adjacent_to_WP_440474667.1] | (Newick) |
Download taxon names association tableTree viewer:
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Please cite:
- Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
- Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
- Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, Mar 19;32(5):1792-7. (PubMed)
- Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000, Apr;17(4):540-52. (PubMed)
- Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 2003, Oct;52(5):696-704. (PubMed)
- Anisimova M., Gascuel O. Approximate likelihood ratio test for branchs: A fast, accurate and powerful alternative. Syst Biol. 2006, Aug;55(4):539-52. (PubMed)
