Phylogeny.fr
Robust Phylogenetic Analysis For The Non-Specialist


Due to databases size, Blast Explorer with genebank NT will only give partial results. This message will be removed at the end of the maintenance. Please flush your browser cache from time to time ...

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If you use results from this site for publication, as I am managing it alone since years, could you please add this to the aknowledgments section (and let me know):
Sebastien Santini (CNRS/AMU IGS UMR7256) and the PACA Bioinfo platform (supported by IBISA) for the availability and management of the phylogeny.fr website used to ....
Moreover, please cite:
doc  Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors And if you use blast-explorer: doc  Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
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Phylogeny.fr is a free, simple to use web service dedicated to reconstructing and analysing phylogenetic relationships between molecular sequences.

Phylogeny.fr runs and connects various bioinformatics programs to reconstruct a robust phylogenetic tree from a set of sequences.

Regarding the constantly growing number of users and the limited space on our server, results will not be conserved for more than one week and ser accounts have been disabled.
Moreover, jobs that generate more than 100 Mo of data, will be killed and deleted without notification.

* Phylogeny analysis

"One Click"
Paste your set of sequences and let the software make decisions on your behalf (Each step is optimized for your data).
"Advanced"
Manually set parameters for the various steps.
"A la Carte"
Create your own phylogeny workflow using more programs available.

* Explore your sequence neighbors

Paste your single sequence, run Blast and explore its homologous sequences.

* Online phylogeny programs

Direct access to the individual tools available on this server.
Multiple Alignment:Phylogeny:Tree viewers:Utilities:
MUSCLE PhyML TreeDyn Gblocks
T-Coffee / 3D-Coffee TNT Drawgram Jalview
ClustalW BioNJ Drawtree Readseq
ProbCons MrBayes ATV Format converter

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