3D-Coffee 11.00.8cbe486 (doc)

Upload your set of sequences in FASTA, EMBL or NEXUS format from a file:

Or paste it here (load example of sequences)

Maximum number of sequences is 50 for proteins and 50 for nucleic acids.
Maximum length of sequences is 2000 for protein and 2000 for nucleic acids.

Advanced Settings...

Pairwise methods: Pairwise alignment methods will be used to make a pairwise alignment of all the possible pairs of sequences.
Lalign_pair: 10 best local alignments
Slow_pair: accurate global alignment
Fast_pair: fast heuristic global alignment
Clustalw_pair: ClustalW pairwise alignment
Mlalign_id_pair Mclustalw_pair Mfast_pair Mslow_pair

Additional alignment formats:
PIR Alignment
Pir Sequences (unaligned)
Score in ASCII format (text)

Print residues number:

Output order:

Valid XHTML 1.0 Transitional