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PhyML 3.1/3.0 aLRT (
doc
+
aLRT
)
1. Overview
2. Data & Settings
3. Results
Datatype:
auto-select
protein
DNA/RNA
Upload your alignment (FASTA, Phylip, Clustal, EMBL or NEXUS format) from a file:
Or paste it here
(
load example of alignment
)
Maximum dataset size: (number of taxa) * (number of taxa) * (sequence size) = 80000000.
Settings
Statistical tests for branch support:
Approximate Likelihood-Ratio Test (aLRT):
SH-like
Chi2-based parametric
Minimum of SH-like and Chi2-based
Bootstrapping procedure: Number of bootstraps:
Substitution model:
Default
HKY85 (DNA/RNA)
GTR (DNA/RNA)
WAG (protein)
Jones-Taylor-Thornton matrix (protein)
Dayhoff (protein)
Advanced Settings...
Number of substitution rate categories:
Gamma distribution parameter:
estimated
fixed:
Proportion of invariable sites:
estimated
fixed:
Transition / transversion ratio (nucleic acids only):
estimated
fixed:
Remove gaps from alignment
To receive the results by e-mail, enter
your address(es)
Multiple e-mail addresses can be entered separated by spaces, semicolon or comma.
:
