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PhyML 3.1/3.0 aLRT (
doc
+
aLRT
)
1. Overview
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3. Results
Input Data
Datatype:
auto-select
protein
DNA/RNA
Upload your alignment (FASTA, Phylip, Clustal, EMBL or NEXUS format) from a file:
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>S30_Solanum_chilense/55-333 CTGCTGCAATACTGCAAGCCAAGTTTCGATCCATGCAGGATCAAATTGATGATCTTGACAAGAACTGGATTC AGTTGAAGTATACACAAAATAAACAACCTTTATGGAAACATGAATATCTAAAGCATGGATCCTGTTGTCAGA AAGTCATCAATCAAAACACGTATTTTAGTCTAGCTTTGCGCTTAAAAGACAGAATTGATCTTCTGAGAACTC TCCAAATACATCGAATTGTTCCTGGATCAAATTTTAAAGAAATCGTTGATGCCATCAAGACAG >S3_Solanum_chilense/55-333 TTGCTGCAATACTGCAAGCCAAGTTTAGATTGATCAAGGATCAGCTTGATGATCTTGACAAGAACTGGATTC AGTTGAAGTATCCACAATATAAACAACCTTTATGGGAACATGAATATCTAAAGCATGGAACCTGTTGTCAGA AAGTCTACGATCAAAACACGTATTTTCGTCTAGCTTTGCGCTTAAAAGACAGGTTTGATCTGCTGAGAACTC TCCAAATACATCGAATTGTTCCTGGTTCAAGTTTTAAAGAAATCTTTGATGCCGTCAAGACAG >S21_Solanum_chilense/55-333 ATGCTGCAATACTGTAAGCCGAATTTATATACATCAAGGATCAGATTGATGATCTTGACAAGAACTGGATTC AGTTGAAGTATCCACAAAATAAACAACCTTTATGGGAACATGAATATCTAAAGCATGGATCCTGTTGTCAGA AAGTGTACGATCAAAACAAGTATTTTAGTCTAACTTTGCGCTTAAAAGATAGGTTTGATCTTCTGAGAACTC TCAAAATACATCGAATTGTTCCTGGATCAAGTTTTAAAGAAATCACTGATGCCATCAAGACAG >S22_Solanum_chilense/55-333 GTGCTGCAAAACTGCAAGCCAAATATACAAATTTCAAGGATAAGATCGACGATCTTGACAAACACTGGATTC AGTTAAAGTTTAATAAATAGGAGCAACCTTTATGGCAATATCAATATTTAAAGCATGGATCCTGTTGTCAGA AAATCTACAACCAAAACACTTATTTTAGTCTTGCCTTGCGCTTAAAAGACAGGTTTGATCTGCTGAAAACTC TCCAAATACATCAAATTTTTCCTGGATCAAGTTTTAAGCAAATCTTTGATGCCGTCAAGACAG >S5_Solanum_chilense/13-291 TTGCTGCAGAACTGCAAGCCAAGTATGTAAATTTCAAGGATATGATCAACGATCTTGACAAAAACTGGATTC AGTTGAAGTTTGATGAAGACGAACAACCTTTATGGCAGTATCAGTATTTAAAGCATGGATCTTGTTGTCAGA AAATGTACAACCAAAACGCGTATTTCAGTCTAGCCTTGCGCCTGAAAGACAGGTTTGATATTCTGAGAACTC TTCAACTACATCAAATTTTTCCTGGATCAAGTTTTAAGGAAATCTTTGATGCCGTCAAGACAG >S1_Solanum_chilense/55-333 GTGTTGCAGCAGTGCAAGCCAATTATGTAAATTTCAAGGATAAGATGAACGATCTTGACAAAAACTGGATTC AGTTGAAGTTTGATGAAGATAAACAACCTTTATGGGTCTATCAATATTTAAAGCATGGATCTTGTTGTCAGA AAATGTACAACCAAAACACGTATTTTAGTCTGGCCTTGCGCTTAAAAGACAGGTTTGATCTTCTGAGAACTC TCGAAATGCATAAAATTTTTCCTGGATCAAGTTTTCAGGAAATCTTTGATGCCGTCAAGACAG >S14_Solanum_chilense/13-291 ATGCTGCAGCAATGCAAACCAATTATGTCAATTTCAAGGATAAGATCAACGATCTTGACAAAAACTGGATTC AGTTGAAGTATGATAAAGACAAACAACCTTTATGGGTCTATCAATATTTAAAGCATGGATCTTGTTGTCAGA ATATGTACAACCAAAACACGTATTTTAGTCTGGCATTGCGCTTAAAAGACAGGTTTGATCTTCTGAGAACTC TCGAAATGCATAAGATTTTTCCTGGATCAAGTTTTCAGGAAATCTTTGATGCCGTCAAGACAG >S13_Solanum_chilense/1-279 CCCGGCCATTTACAATTCTGCATGAAATTTTTGAACCGGGTAGTGTCGATGCTCTGGACCAGCACTGGATTC AGTTGAAGTTTGAACGCGGTAATCAACCTCTCTGGAGAGATCAATACAAAAAGCATGGAACGTGTTGTTTAC CGCGCTACAATCAGTTGCAGTATTTTTTACTAGCCATGCGACTGAAAGAAAAGTTTGATCTTTTGACAACTC TCAGAACCCATGGAATTACTCCTGGTACAAAATATAAAAAAATCCAAGATGCTATTAAGACAG >S18_Solanum_chilense/55-333 CCCGGCCATTTACAATTCTGCATGAAATTTTTGAACCGGGTAATGTCGATGCTCTGGACCAGCACTGGATTC AGTTGAAGTTTGAACGCGGTGATCAACCTCTCTGGAGAGATCAATACAAAAAGCATGGAACGTGTTGTATAT CGCGCTACAATCAGTTGCAGTATTTTTTACTAGCCATGCGACTGAAAGAAAAGTTTGATCTTTTGACAACTC TCAGAACCCATGGAATTACTCCTGGTACAAAATATAAAAAAATCCAAGATGCTATTAAGACAG >S19_Solanum_chilense/55-333 CGATTGGAGTTCTGCACTGGCGTCTTTTCAGTCTAAAAGACAGTATCAATGATCTGGAACACCATTGGATTC AATTGAAGTTCGATGAACATAATCAACCTCTCTGGAGCCATGAGTACACAAAGCATGGAATGTGCTCTTCAA ATCTTTACGATCAGAGAGCATATTTTTTATTAGCCATGCGCTTAAAAGATAAATTTGATCTTTTGACAACTT TCAGAACTCATGGAATTACTCCCGGAACAAAGTTTGATGAAATCCAAAGTGCTATCAAGACAG >S20_Solanum_chilense/55-333 CGTCTGGAGTTCTGCTCCGGCGGAAATTTGAACTACAAGATCATATCAATGATCTGGATCACCATTGGATTC AAATGAAGTTCACCGAACAAAAACAACCTCTCTGGAACCACGAATACACAAGACATGGAAGGTGTTGTTTCA ATCTCTACGATCAGAACGCATATTTTTTACTAGCCATGCGCTTAAAAGATAAATTAGATCTTGTAAGAACTC TCAGAAATCATGGAATTACCCCAGGGACAAAGTTTGATGAAATCAAAAGTGCTATTAAGACCG >S17_Solanum_chilense/55-333 CGTCTGAATAACTGTGATCCCATAACTATCGGATCATCCCGGAGGAGAAACGGTTTGACAAGCGCTGGCCTC AGTTAGAAAATACAAAACCAAAGCAACCATTCTGGGAAAAGGAATATAAAAGGCATGGAACGTGTTGCAAAA ATTTGTATAACCAAGCAACATACTTTGATTTGGCCATGAATTTAATCGACAAGTTCGATATTTTAACAATAC TTAGACATGAGGGAATCATCCCTGGAACGTACATTAAAAATGTCGAAGATGCCATCAAGAAAG >S6_Solanum_chilense/55-333 ATTCTTAATAATTGCAATCCCGTAAATATGCCTCTGTCACGGGCGGTAAATTTGTTAACAAGCACTGGCCTG ACTTGATCCTCACCGAAGAACGTCAAGGTTTCTGGGAGTATCAATTCAAAAAGCATGGAACATGTTGTTCAG ATCTCTTCAATCAAGAAAAATATTTTGATTTAGCCTTGATCTTAAAAGACAAATTCGATCTTTTGACAACAT TCAGAAACAAGGGAATTATTCCCAAATCAACTATTAATAAAATCCAAAAAACCATCCGAACAG >S8_Solanum_chilense/34-312 GTTCTTAATAATTGCAATCCCGTAGCTATACTACTGTCACGGGCGATAAATTTTATAACAAGCACTGGCCTG ACTTGATCCTCACCGAAGAACATCAAGGTTTCTGGGCGTACCAATTCAAAAAGCATGGAACATGTTGTTCAG ATCTCTTCAATCAAGAAAAATATTTTGATTTGGCGTTGATCTTAAAAGACAGGTTCGATCTTTTGACAACAT TTAGAAACAAAGGAATTATTCCCAAATCAACTATTAATAAAATCCAAAAAACCATCCGGACAG >S34_Solanum_chilense/55-333 GAACTGAATTACTGTAATCGCATCTATATACTAGTCTCACGGATGAAATATTTGATAATAAGCACTGGCCTG ACTTGTTCCTAAGAGAATGTAAACAAAAATTCTGGCGACATGAATACATAAAGCATGGAACGTGTTGTTCAG ATCTCTTCAATGAAACACAATTCTTTGATTTAGCATTGGTCTTAAATGACAGGTTTGATCTTGTCAAGACTT TCGAAAGTCACGGAATAATTCCTCTATCTTCTGTTCAGAAATTCGAAAAAACTATCAGGTCAG >S2_Solanum_chilense/55-333 GAACTGAATTTTTGTAATCCCATTCGTATACTATTGTCAGGCATGGAACATTTGAAAACAAGCACTGGCCTG ACTTGATGCGAAGCAAAGATAACCAAGAATTCTGGAAACATGAATACATAAAGCATGGATCGTGTTGTACTG ATCTATTCAATGAAACACAATACTTTGATTTAGCGTTGGTTTTAAAAGACAGGTTTGATCTTCTGACGACTT TCAGAATTCATGGAATTGTTCCTCGATCATCTGTTGATAAAATTAAAAAAACTATCAGGTCAG >S25_Solanum_chilense/16-294 GAACTGAGTTTCTGTGATCCCGTAAGTATACTATTGTCAGGCATGAAGAATTTGAAAACAAGCACTGGCCTG ACTTGATGCGAAGCAAAGATAACCAAGATTTCTGGGATCATGGATATGTAAAGCATGGATCGTGTTGTAAAA ATCTATTCAAAGAAGCACAATACTTTGATTTAGCATTAGTTCTAAAAGACAGGTTTGATCTACTGACAACTT TCAGAAATCACGGAATTGTTCCTGTATCATTTGTTGATAAAATAAAAAAAACTATCAGGTCAG >S32_Solanum_chilense/52-330 GTCATGTATGACTGTGATCCCCAAAGTATAAAACAATAGATGATAATATACTCACTGATGCCCGCTGGCCTC AATTGACTTCCACCAAAAAATTTCAAAGATTCTGGGAATATGAATATAGAAAGCATGGAACGTGTTGTGCAG ATGTCTTCAATCAATCTATGTATTTTGACATATCCATGAAATTAACAGATTCGATTGATCTTTTGAAAATTC TAAGAACAAAGGGAATTAAACCTGGATATACTTATACCGGTGACCAAATTGCCATTAAGTCAG >S29_Solanum_chilense/55-333 GTCATGAATGACTGTTATCCAAAAAGTTTACAAATATAAAGGATACTACACTCAATGAACCCCGCTGGCCTC AATTGACTTTAGACAAATATGATCAGGAATTCTGGAAATATGAATATGAAAAGCATGGATTGTGTTGTGAAG ATGTCTACAATCAATCTCAATATTTTGATATAGCCATGAAATTAAAAGATTCGATTGATCTTTTGAATATTC TAAAAACACGTAGAATTATACCTGGATTTAAATATACCGGTGACCAAATTGCCATCAAAAAAG >S33_Solanum_chilense/55-333 ATTATGTATGACTGTAATCCAAAGAGTTTAAAAAAATATATGACAATCTACTCAATGAATCCCGCTGGCCTC AATTGACTTCACACGAATATGATCAGACATTCTGGAAATATGAATATGAAAAGCATGGACTGTGTTGTGAAA AAGTCTATGATCAATCTCAATATTTTGATATAGCCATGAAATTAAAAGATTCTATTGATCTTTTGAATATTC TAACAACAAATAGAATCGTACCTGGATTTCAGTATACCGGTGACCAAATTGCCATCAAAAGAG >S26_Solanum_chilense/55-333 ATGCTGAATTACTGCTCATCCGTGAGTATGAGGATATCACGGATAATAAACTGAAAGCATCCTACTGGCCAG ATTTGACCACCAGCGTAGAAAACCAAGGCTTCTGGAAACATGAATTCAACAAGCACGGAACGTGTAGTATGG AACTTTACAATCAAGAAGCATATTTTGATTTAGCCATGAAATTAAAAGACAAGTTCGATCTTTTAAGAATTC TTGGAGATAAGGGAATTACTCCAAGAGCTGTTGTAAAGCAAGTTGAAACTGCCATTAAGGGAA >S15_Solanum_chilense/55-333 ATGCCGATTAACTGCCCGGCCAGAGCTACAAAAGTATTACGGACTAGAAAATCAAAGAGCAACACTGGCCCG ATTTGACCTCCAATCAAGGCAGTGCAGAATTCTGGAGATATCAATACAAGAAGCACGGAACGTGTAGTGTGG ACCTATATAATCAAGAACAATATTTTGATTTAGCCATTGAATTAAAAGAGAAGTTTGATCTTTTGAAAACTC TCAAAAATCACGGAATTACTCCATCAAAAACTGTTATAGATGTCGAAGAAGCCATCAAGGCCG >S27_Solanum_chilense/55-333 ATGCTGAATAACTGTGATTCTGCGACTATAAACGTATCATGAACCATATGCTCAAAGAGTATGACTGGCCTA ATTTGATCTCCAAGGAAGAATATCACGATTTCTGGGGATATGAATTCAATAAGCATGGAACCTGCAGTACAA ATCGTTATAATCAAGACCAGTATTTTCATTTAGCCCTCAAATTAAAAAACCAGTTTGATCTGTTGAAAATTC TTAGAAATCATGGTATTATTCCGGGGAAATCTGTTAAAGATGTAGAAGATGCCATTAAGGCAG >S28_Solanum_chilense/40-318 ATGCTGAATGACTGTGGTTCTGCGATTATGATGATATTCCGGATGATATGCGCAAAGAGTCTGACTGGCCTA ATTTGACCTCCAGGGCAGAATACCAAGAATTCTGGGGATATGAATTCAATAAGCATGGAACCTGCAGTATGG ATCGTTATAATCAAGACCAATATTTTGAGTTAGCCCTCAAATTAAAAAACCAGTTTGATCTGTTGAATATTC TTAGAAATCATGGTATTATTCCGGGGAAAACAGTTAAAGATGTAGAAGATGCCATTAAGGCAG >S7_Solanum_chilense/55-333 ATTCTGTATGACTGCGATGTACAGATTACGTTCAGATCGAGGATCAGATATTAAATGACAAACGCTGGCCTC AACTCAGATACGATTATTATAAACAATATCAGTGGAAAAATGAATTCCTAAAACATGGAACCTGTGGTATAA ATCGCTACAAACAACCAGCATATTTTGATTTAGCCATGAAGATAAAAGACAAGTTTGATTTATTGGGAACTC TGAGAAAACATGGAATTAATCCTGGTTCAACTCTTAATGACATAGAACGTGCTATAAAGACAG >S11_Solanum_chilense/55-333 ATACTGAATAACTGCAATTTTGTCGTTACACTAAGATCACGGATCAAAAAAAATCTGACAAACGCTGGCCTC AACTCAGATACGAAAAATAGAAACAAGATCTCTGGGAAAAAGAATTCCTAAAACATGGTAGCTGTAGTATAA ATCGCTACAAACAAGAAGCATACTTTGATTTAGCCATGAAGATAAAAGACAGGTTTGATCTATTGGGAACCC TCAGAAATCAAGGAATTATTCCTGGTTCAACTCTTGATGATATTGAACGGGCTGTAAAGACAG >S31_Solanum_chilense/52-327 CGGCTAAATTTTTGT---GGCGCCAGTATAAGACTATCGAAGTTGATAAACCAAAGGAATATCGTTGGCCTA ACATAACAACTACCGAAGAAGATCAAGTTTTCTGGGAAAACCAATACAATAAGCATGGAACATGTTGTTCAG AGCTCTTTGATCAAGCAGCATATTTTGATTTAGCCATTTATCTTAAAGACATGTTTGATCTTCTGAAAATTC TGCGGAAACATGGTATTACTCCTGGAACCGCCACCTCTCGAAATATCCATGCTGTCAAATCGG >S9_Solanum_chilense/34-312 CGGCTGAATCATTGCAGTACCAAACGTTTAACACGATCACGGATATAAAAAAAGATGAACTCCGCTGGCCTA ACTTGACCACCACTGAATAAGATCAAGTTTTCTGGGAAAAAGAATTCAATAAGCATGGAACATGTTGTTCAG ATCTCTTTGATCAAAATGCATATTTTAATTTAGCCATGGGCTTAAAAGACAGGTTTGATCTTTTGAATGTTC TCAGGAAAAATGGTATTACTCCTGGAACAAGTACCTCTCGCAAAATCGTTTCTATCAAGTCAC >S16_Solanum_chilense/55-330 CGGCTGAATTT---CTGCAAGATAAGTATATCAAGAGCGCGGATGGTAAAAAAGCAGAATACCGTTGGCCTA ACTTGACCACCACCGAAGAAAATGAATTTTTCTGGGAAAAGGAATATAAAAAGCATGGAACTTGTTGTCTAC CCCTCTATGATCAAAATTCTTATTTTAAGTTAGCCGTGGACTTAAAAGATAAATTTGATCTCTTGAATATTC TCGGAAAACATGGTATTAGGCCTGGAACAACTACCTCTCAGAAAATTGCTGCTATCAGGTCAG >S4_Solanum_chilense/55-333 GAGCTTAATTACTGTGGACGTATAACTATAAAATTATGACGGATGGGGAAACAAATTATGAACGATGGCCTG ACTTGACCATCGAAAAAGACAAACAAAATTTCTGGAGGTATGAATATAATAAACATGGAACGTGCTGTGAAG CGACCTACAATCAAGAGCAATATTTTCATCTAGCCGTGGCCTTAAAAGACAAGTTTGATCTTTTGAAATCTT TGGGAAATCATGGAATTATTCCTGGATCGAAAGTCCAGAAAATCAATAACACCATCAAGACTG >S10_Solanum_chilense/34-312 GTGCTGAATAACTGCAAGCCTAATCTTACAAAGATATAAGGGATTCCATTCAAAACTACGATCGCTGGCCTG ACTTGAAAAGAGCAAAGTAAGATCAAGAGTTCTGGCGACATGAATTTAATAAGCATGGATCGTGCAGCATGG ACAGATACGATCAAAAAGCATATTTCGATTTAGCTATAAATTTGAAGGACAAGTTTGACCTTTTGACAACTC TCCGGAAACATAGAATTTATCCTGGATTCGCTGTTAAAGAAATTGGGGATGCTATCAAAACAG >S23_Solanum_chilense/55-333 ATGTTGAATGATTGCTACGGTCAATGTATACTACTATAGAGCTTCGTGAACAAAATAACGATCGCTGGCCAG ACTTGAGATATACCAAAGAAAAACAGAAGTTCTGGGAATATGAATATAATAAGCACGGGACGTGTTGTCAGC CACGCTACAATCAACAACAATATTTTAATTTAACCATGAAATTACGAGACAAGTTTGATCTTTTGTCAGCTC TCCAAAATCATGGAATTACTCCTGGATCAACTGTCAAGAAAATTGGACTTGCCATTGCTACAG >S12_Solanum_chilense/13-291 TTCCTGAATAACTGCAGAAATCTGCTTATATTGCATTAACGAATGGTGAGCAAAGTGACGATCGGTGGCCTG ACTTGACTACCAACAAATAAGAACAAAAGTTTTGGGACTATCAATACAATAAACATGGAACCTGCTGCGAGA AGCTCTACAATCAGGCACAATATTTTAATCTTACTATGAATCTGAAAGACAAATTTGATCTTTTGAGAATTC TCAGATCTCATGGAATTGTTCCTGGATCAACTATTAAGAAATTCAGGGAGGCCATTGAGACAG >S24_Solanum_chilense/55-333 CAGCTGAATGACTGCAAATATAGGCATATAAAAAATTAAAGGATGATGAGCAAAGTGACGATCGCTGGCAAG ACTTGACTTCCACAAAATAAAGACAAGAGTTTTGGGAACACGAATACAATAAACATGGTACCTGTTGCGATT CTCTCTATAATCAAGAACAATATTTTAATCTAACTATGGATCTGAAAGACAAATTTGATCTTTTGAGTATCC TCAGAAATCATGGAATTGTTCCTGGATCAAGTATTAAGCAATTCGGGGATGCTATTGAGACAG
Maximum dataset size: (number of taxa) * (number of taxa) * (sequence size) = 80000000.
Settings
Statistical tests for branch support:
Approximate Likelihood-Ratio Test (aLRT):
SH-like
Chi2-based parametric
Minimum of SH-like and Chi2-based
Bootstrapping procedure: Number of bootstraps:
Substitution model:
HKY85
GTR
Advanced Settings...
Number of substitution rate categories:
Gamma distribution parameter:
estimated
fixed:
Proportion of invariable sites:
estimated
fixed:
Transition / transversion ratio (nucleic acids only):
estimated
fixed:
Remove gaps from alignment
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