Equipe MAB - LIRMM Information Genomique et Structurale

BioNJ (doc)




Phylogeny: BioNJ


Input:
Alignment

Outputs:
Substitution model: JTT


Please cite:
  1. Dereeper A., Audic S., Claverie J.M., Blanc G. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol. 2010 Jan 12;10:8. (PubMed)
  2. Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
  3. Gascuel O. BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Mol Biol. Evol. 1997, Jul;14(7):685-95. (PubMed)
  4. Felsenstein J. PHYLIP - Phylogeny Inference Package (Version 3.2). 1989, Cladistics 5: 164-166
  5. Elias I., Lagergren J. Fast computation of distance estimators. BMC Bioinformatics. 2007 Mar 13;8:89. (PubMed)

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